PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_25243_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

NAC

Protein Properties

Length: 249aa MW: 28409 Da PI: 9.4973

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_25243_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	133	2.1e-41	33	162	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk...kvkaeek..ewyfFskrdkkyatgkrknrat 78 +p GfrF+Ptd+el+ +yL k+++k+l+ + ikev +yk++P +L + +++++ + ewyfF++rd+k+++gkr+nra+ Cotton_A_25243_BGI-A2_v1.0 33 MPSGFRFKPTDDELI-FYLMYKARSKPLPP-TRIKEVPLYKYDPDNLTArsgNMSSNGTinEWYFFTSRDRKHPQGKRPNRAA 113 699**********.9******999.67**********85456343333345****************** PP NAM 79 ksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +g+Wka +dk+v+s +g+lvglkktLv+ +g+ +k++kt+W+mhey l Cotton_A_25243_BGI-A2_v1.0 114 GDGFWKAVNSDKHVKS-HGKLVGLKKTLVYCRGKPSKAQKTNWIMHEYVL 162 ************.999**************************87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.7E-46	30	187	IPR003441	NAC domain
PROSITE profile	PS51005	45.721	33	187	IPR003441	NAC domain
Pfam	PF02365	8.4E-22	34	162	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 249 aa Download sequence Send to blast
MSINKSAAME EDGNQELMVR MKEAEDEAYL KSMPSGFRFK PTDDELIFYL MYKARSKPLP 60 PTRIKEVPLY KYDPDNLTAR SGNMSSNGTI NEWYFFTSRD RKHPQGKRPN RAAGDGFWKA 120 VNSDKHVKSH GKLVGLKKTL VYCRGKPSKA QKTNWIMHEY VLSDPPQTTH KNDHQLDGWA 180 LCRVYNRKPE APKAPEKSSP QNFGSNNLNI QNQIGEQSAL QNFGTEDLNF SESDSFLLYA 240 NFGIGIYSL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	3e-45	18	193	3	174	Stress-induced transcription factor NAC1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds DNA motifs 5'-CGT[AG](5N)NACG[ACT][AC][AT][ACG][ACT]-3' and 5'-CACG[ACT][AC][AT][AGT][CT]-3' in target genes promoters. Promotes leaf senescence and reduces fruit yield and sugar content, probably by establishing abscisic acid (ABA) homeostasis. {ECO:0000269\|PubMed:29760199}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Accumulates during age-dependent and dark-induced leaf senescence. {ECO:0000269\|PubMed:29760199}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017613504.1	0.0	PREDICTED: NAC domain-containing protein 68-like
Swissprot	K4BWV2	2e-49	NAP1_SOLLC; NAC domain-containing protein 1
TrEMBL	A0A1U8PMA0	0.0	A0A1U8PMA0_GOSHI; NAC domain-containing protein 68-like
STRING	Gorai.012G073400.1	1e-177	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM24817	3	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G77450.1	3e-49	NAC domain containing protein 32

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Ma X, et al. The NAC Transcription Factor SlNAP2 Regulates Leaf Senescence and Fruit Yield in Tomato. Plant Physiol., 2018. 177(3): p. 1286-1302 [PMID:29760199]