PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_25268_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family TALE
Protein Properties Length: 363aa    MW: 41604.4 Da    PI: 6.4539
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_25268_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.72.3e-092903252055
                                 HHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
                    Homeobox  20 eknrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                                 +k +yps++e+  LA+++gL+++q+ +WF N+R ++
  Cotton_A_25268_BGI-A2_v1.0 290 YKWPYPSETEKVALAESTGLDQKQINNWFINQRKRH 325
                                 4679*****************************885 PP
2ELK37.93.7e-13245266122
                         ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                                 ELK++LlrKYsgyL+sLkqE+s
  Cotton_A_25268_BGI-A2_v1.0 245 ELKNHLLRKYSGYLSSLKQELS 266
                                 9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012555.9E-23101145IPR005540KNOX1
PfamPF037901.1E-23102144IPR005540KNOX1
SMARTSM012561.8E-25152203IPR005541KNOX2
PfamPF037911.0E-21157201IPR005541KNOX2
PROSITE profilePS5121311.296245265IPR005539ELK domain
PfamPF037892.5E-10245266IPR005539ELK domain
SMARTSM011883.5E-7245266IPR005539ELK domain
PROSITE profilePS5007113.005265328IPR001356Homeobox domain
SuperFamilySSF466896.42E-20266340IPR009057Homeodomain-like
SMARTSM003898.8E-13267332IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.3E-27270331IPR009057Homeodomain-like
CDDcd000861.29E-11277329No hitNo description
PfamPF059201.4E-16285324IPR008422Homeobox KN domain
PROSITE patternPS000270303326IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001708Biological Processcell fate specification
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010089Biological Processxylem development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MEYNQINENN STSRGNFLYA SQVLASNGSP YGRTSSGSIP PVLTSFHLQP SDQHPIVKTE  60
ASTSQHAQKF HYNNNNNNPL LRGHQPIHHQ QEGNESSSEV EAIKAKIIAH PQYSNLLEAY  120
MDCQKVGAPP EVVARLAAVR QEFEARQRSS VTSRDNSKDA ELDQFMEAYY DMLVKYREEL  180
TRPIQEAWDF MRRIEAQLNM LGNGPVRIFN SDEKCEGVGS SEEDQDNSGG ETELPEIDPR  240
AEDRELKNHL LRKYSGYLSS LKQELSKKKK KGKLPKEARQ KLLSWWELHY KWPYPSETEK  300
VALAESTGLD QKQINNWFIN QRKRHWKPSE DMQFMVMDGL HPQNAALYMD GHYMGDGPYC  360
LGP
Functional Description ? help Back to Top
Source Description
UniProtProbably binds to the DNA sequence 5'-TGAC-3'.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00675ChIP-seqTransfer from GRMZM2G017087Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ5270501e-138HQ527050.1 Gossypium herbaceum clone NBRI_D_EYT27PB02DDKEC simple sequence repeat marker, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017643421.10.0PREDICTED: homeobox protein knotted-1-like 2
SwissprotO041350.0KNAP2_MALDO; Homeobox protein knotted-1-like 2
TrEMBLA0A1U8LWR70.0A0A1U8LWR7_GOSHI; homeobox protein knotted-1-like 2
STRINGGorai.010G029000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM65662335
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08150.11e-145KNOTTED-like from Arabidopsis thaliana