PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_25357_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 245aa    MW: 27094.9 Da    PI: 4.8812
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_25357_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.99.4e-1762109253
                         AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkl 53 
                                  ykGVr ++ +g+Wv+eIr p++   + r++lg+f tae+Aa+a++ a + +
  Cotton_A_25357_BGI-A2_v1.0  62 IYKGVRKRS-WGKWVSEIRQPRK---KSRIWLGTFRTAEMAARAHDVASLTI 109
                                 69****888.**********843...6*******************997765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.9E-1161109IPR001471AP2/ERF domain
CDDcd000181.96E-3161121No hitNo description
Gene3DG3DSA:3.30.730.105.4E-3162120IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-2062120IPR016177DNA-binding domain
SMARTSM003802.1E-3362125IPR001471AP2/ERF domain
PROSITE profilePS5103222.56362119IPR001471AP2/ERF domain
PRINTSPR003672.2E-106374IPR001471AP2/ERF domain
PRINTSPR003672.2E-1085101IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MAESNHCSSS ETESSITNNN SSSSSLRKPN NPSAMELAAT SMIIDQGKKK QRPRDSSTKH  60
PIYKGVRKRS WGKWVSEIRQ PRKKSRIWLG TFRTAEMAAR AHDVASLTIK GDSATLNFPD  120
LAELLPRPVS LLPRDIQAAA VKAASMVNLN RPSSSSSSSS SSLSESSEEP EELSEIVELP  180
NIEGNFDSFF DSGNEFVLLD SVDVWVYDPS QDFNGGFYDQ IWDVTENFKL NSGSFETFSS  240
ENNLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-1844119172Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcriptional activator.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by cold stress. {ECO:0000269|PubMed:11798174}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ3935531e-134GQ393553.1 Gossypium hirsutum cultivar Deltapine 33 B clone MONCS0518 SSR marker CGR5551 genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017610501.11e-179PREDICTED: ethylene-responsive transcription factor TINY-like
SwissprotQ391276e-57TINY_ARATH; Ethylene-responsive transcription factor TINY
TrEMBLA0A1U8I2031e-174A0A1U8I203_GOSHI; ethylene-responsive transcription factor TINY-like
STRINGGorai.006G097000.11e-138(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18528283
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25810.11e-54ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]