PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_25408_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 236aa    MW: 27324.3 Da    PI: 6.0385
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_25408_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.92.3e-181764148
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
             Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                +g+W +eEde+l+  vk+lG+++W+ +a+t g++R++k+c++rw +yl
  Cotton_A_25408_BGI-A2_v1.0 17 KGPWHEEEDERLISFVKLLGSRRWDYVAQTSGLKRSGKSCRLRWVNYL 64
                                79********************************************97 PP
2Myb_DNA-binding51.52.3e-1672115348
                                 SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
             Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                 + ++eE+ +++++++++G++ W+ Iar+++ gRt++++k++w+++l
  Cotton_A_25408_BGI-A2_v1.0  72 SISAEEEMIILKLHQKWGNK-WSMIARMLP-GRTDNEIKNYWRTHL 115
                                 5699****************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.8181264IPR017930Myb domain
SuperFamilySSF466893.12E-2814111IPR009057Homeodomain-like
SMARTSM007172.1E-111666IPR001005SANT/Myb domain
PfamPF002491.1E-141764IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-211871IPR009057Homeodomain-like
CDDcd001672.03E-81964No hitNo description
PROSITE profilePS5129424.93665119IPR017930Myb domain
SMARTSM007179.0E-1669117IPR001005SANT/Myb domain
PfamPF002493.5E-1471115IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.3E-2472118IPR009057Homeodomain-like
CDDcd001671.23E-1174115No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MANETTTAAM QGENLRKGPW HEEEDERLIS FVKLLGSRRW DYVAQTSGLK RSGKSCRLRW  60
VNYLRPNLKH GSISAEEEMI ILKLHQKWGN KWSMIARMLP GRTDNEIKNY WRTHLRKKAV  120
IQDQGNFRFI QEDDNSPNSK TYNGESYNPF VDISDTQNSC YAAAPVSDFG TSPYETRLSD  180
WIPEFQSDQS EIKSQLDSTT TTTTTTTTTH SCNFYPALFY EENDVWGYSG SLWNMD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A9e-28151192105MYB PROTO-ONCOGENE PROTEIN
1h88_C2e-271511956159MYB PROTO-ONCOGENE PROTEIN
1h89_C2e-271511956159MYB PROTO-ONCOGENE PROTEIN
1mse_C9e-28151192105C-Myb DNA-Binding Domain
1msf_C9e-28151192105C-Myb DNA-Binding Domain
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00406DAPTransfer from AT3G53200Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6160101e-118JX616010.1 Gossypium hirsutum clone NBRI_GE60350 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016739524.11e-171PREDICTED: transcription factor MYB48-like
TrEMBLA0A1U8NNK91e-169A0A1U8NNK9_GOSHI; transcription factor MYB48-like
STRINGGorai.009G413600.11e-160(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM113972533
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53200.12e-63myb domain protein 27