PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_25569_BGI-A2_v1.0
Common NameF383_06969
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB_related
Protein Properties Length: 442aa    MW: 49532.1 Da    PI: 9.6119
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_25569_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.31.7e-08437236
                                SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS- CS
             Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRt 36
                                grW t+E++ll  av ++G+++W+++a+++  +Rt
  Cotton_A_25569_BGI-A2_v1.0  4 GRWGTWEELLLGGAVLRHGTRDWNLVASELR-TRT 37
                                9******************************.**9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF002494.6E-7337IPR001005SANT/Myb domain
CDDcd001670.00402552No hitNo description
SMARTSM002971.3E-13246353IPR001487Bromodomain
Gene3DG3DSA:1.20.920.102.0E-15246356IPR001487Bromodomain
SuperFamilySSF473707.72E-18250355IPR001487Bromodomain
CDDcd043697.36E-15250344No hitNo description
PfamPF004394.7E-12259337IPR001487Bromodomain
PROSITE profilePS5001410.015264334IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 442 aa     Download sequence    Send to blast
MGTGRWGTWE ELLLGGAVLR HGTRDWNLVA SELRTRTVAP FGFTPEICKA KYEDLQQRYS  60
GCKAWFEELR KQRMAELRQA LEKTEDSIGS LESKVEGLKA EKKDDSQVIY GSSQTESAIP  120
CLKSEGIEFS SKEKCKDRLS ASSFTQEAET NWPPHCQIPV AVPAEVMDVK QGDSLTSERE  180
QISSIDKLVN TFCGGRFLSI RKRKRKDCSK NAKEGSVGES EFLGPADVAN ALWCKETSAS  240
SEDQNRGSSS EVIDDIMGIF SSIAKNDCTS VFRRRLDSQE RGRYKKMIRQ HRDFDTIRSR  300
IASKSIMSVK ELFRDMLLVA NNALVFYSKN TREYKSALLL RHIVTATLQQ HLKELRSKVP  360
LHKPLAKPRS IHPSHHERLG NTANNETPVV VNSRGCKNTS NAESPPSMES STFSAQPRNA  420
GCGYAIQKSE SPTKGRKRAR AC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1200205RKRKRK
2200206RKRKRKD
3434440GRKRARA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017603956.10.0PREDICTED: uncharacterized protein LOC108450718 isoform X1
TrEMBLA0A0B0NNK00.0A0A0B0NNK0_GOSAR; Bromodomain-containing 8
STRINGGorai.009G171600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7607915
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42150.19e-33DNA-binding bromodomain-containing protein