PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_25665_BGI-A2_v1.0
Common NameF383_17963
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ARR-B
Protein Properties Length: 573aa    MW: 64399.8 Da    PI: 4.9498
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_25665_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like78.58.2e-25202255155
                     G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                                 k+r++Wt +LH++Fv+av+q+ G +k  Pk+il+lm+v+ Lt+e+v+SHLQkYRl
  Cotton_A_25665_BGI-A2_v1.0 202 KARVVWTVDLHQKFVKAVNQI-GFDKVGPKKILDLMNVPWLTRENVASHLQKYRL 255
                                 68*******************.9*******************************8 PP
2Response_reg83.37.2e-28221301109
                                 EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTT CS
                Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahg 81 
                                 vl+vdD+p+ +++l+++l+k  y ev+++  ++eal+ll+e++  +D+++ D++mp+mdG++ll++   e  +lp+i+++  g
  Cotton_A_25665_BGI-A2_v1.0  22 VLVVDDDPTWLKILEKMLKKCSY-EVTTCCLAREALNLLRERKdgYDIVISDVNMPDMDGFKLLEHVGLEM-DLPVIMMSVDG 102
                                 89*********************.***************999999**********************6644.8********** PP

                                 THHHHHHHHHTTESEEEESS--HHHHHH CS
                Response_reg  82 eeedalealkaGakdflsKpfdpeelvk 109
                                 e + + + ++ Ga d+l Kp+ ++el++
  Cotton_A_25665_BGI-A2_v1.0 103 ETSRVMKGVQHGACDYLLKPIRMKELRN 130
                                 *************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23001.5E-4419165No hitNo description
SuperFamilySSF521727.12E-3619144IPR011006CheY-like superfamily
SMARTSM004481.4E-3220132IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011043.31221136IPR001789Signal transduction response regulator, receiver domain
PfamPF000726.8E-2522131IPR001789Signal transduction response regulator, receiver domain
CDDcd001562.48E-2923136No hitNo description
SuperFamilySSF466895.2E-18200259IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.9E-28200260IPR009057Homeodomain-like
TIGRFAMsTIGR015574.8E-22202255IPR006447Myb domain, plants
PfamPF002497.8E-8204254IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009735Biological Processresponse to cytokinin
GO:0010082Biological Processregulation of root meristem growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 573 aa     Download sequence    Send to blast
MVLAESGFSS PRNDAFPAGL RVLVVDDDPT WLKILEKMLK KCSYEVTTCC LAREALNLLR  60
ERKDGYDIVI SDVNMPDMDG FKLLEHVGLE MDLPVIMMSV DGETSRVMKG VQHGACDYLL  120
KPIRMKELRN IWQHVFRKKI HEVRDIESLE GFESIQMTRS GYDLFDDGHF LSGDDTTSGR  180
KRKDADNKHD DRELSDPSST KKARVVWTVD LHQKFVKAVN QIGFDKVGPK KILDLMNVPW  240
LTRENVASHL QKYRLYLSRL QKESDIKNSF IGMKHSDLPS KDSTASFGPH KAMNMIPDDV  300
PNSTYSFSAS NSQAQNVDLK GQGDLKGITS APMAEPKGAL SVDIRDSHEA KSTQMSFDHS  360
LGSVDSAVSF ASFNSTTPLQ YPWTEIPEIQ FKQECESLHL ENGFSQLPLP GPSMIENEAN  420
RSRIEVKPLL DECRSNFVEH LGPVGAEDLF PIQSKSQSLN NQVFDLISAT KSSMKTQDVG  480
LNYLADSEFA LRNLNASGVG VPLATLSEDL QICWLQGDCY PMNYGLQDLE CSTYDNPALM  540
AETPFHLYDV LRFDHEHLFD PAEYYAIDQG LFA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A5e-18198260163ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00010PBMTransfer from AT1G67710Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ5249201e-74HQ524920.1 Gossypium herbaceum clone NBRI_C_EYT27PB01BJGHL simple sequence repeat marker, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017616396.10.0PREDICTED: two-component response regulator ARR11
SwissprotQ5N6V81e-147ORR26_ORYSJ; Two-component response regulator ORR26
TrEMBLA0A0B0MKC10.0A0A0B0MKC1_GOSAR; Two-component response regulator ARR11-like protein
STRINGGorai.005G173300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM80662740
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67710.11e-135response regulator 11
Publications ? help Back to Top
  1. Du L, et al.
    The two-component signal system in rice (Oryza sativa L.): a genome-wide study of cytokinin signal perception and transduction.
    Genomics, 2007. 89(6): p. 697-707
    [PMID:17408920]