PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_25715_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family LBD
Protein Properties Length: 172aa    MW: 18781.6 Da    PI: 8.6088
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_25715_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260129.61.3e-40131251100
                      DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkal.............peeeredamsslvyeAearar 70 
                                 +CaaCk+lrr+Ca+dCv+apyfpa++p+kfanvhk+FGasnv k+l+al             p ++r da+ss+vyeA+ar+r
  Cotton_A_25715_BGI-A2_v1.0  13 PCAACKLLRRRCAQDCVFAPYFPADEPQKFANVHKVFGASNVNKMLQALqadpiklsklqelPVHQRGDAVSSIVYEANARVR 95 
                                 7*********************************************998665555555555566777**************** PP

                      DUF260  71 dPvyGavgvilklqqqleqlkaelallkee 100
                                 dPvyG+vg i++lqqq+++l+++lal+++e
  Cotton_A_25715_BGI-A2_v1.0  96 DPVYGCVGAISSLQQQIDTLQTQLALTQAE 125
                                 *************************99976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089124.61312126IPR004883Lateral organ boundaries, LOB
PfamPF031952.0E-4013123IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
MKESGRKQGA ASPCAACKLL RRRCAQDCVF APYFPADEPQ KFANVHKVFG ASNVNKMLQA  60
LQADPIKLSK LQELPVHQRG DAVSSIVYEA NARVRDPVYG CVGAISSLQQ QIDTLQTQLA  120
LTQAEVVHLR VRQTASFPHG FCPTSPSNSG SPTFKLMGSQ TMPIFDMDMV VD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A3e-4791387123LOB family transfactor Ramosa2.1
5ly0_B3e-4791387123LOB family transfactor Ramosa2.1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ3948065e-59GQ394806.1 Gossypium hirsutum cultivar Delta Opal clone MONCS1829 SSR marker DPL0016 genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017641000.11e-113PREDICTED: LOB domain-containing protein 4-like
SwissprotQ9SHE92e-73LBD4_ARATH; LOB domain-containing protein 4
TrEMBLA0A0B0MMN61e-112A0A0B0MMN6_GOSAR; LOB domain-containing 4-like protein
STRINGGorai.010G170700.11e-110(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13128340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31320.13e-69LOB domain-containing protein 4