PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_25722_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 334aa    MW: 36228.7 Da    PI: 6.4227
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_25722_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2673.7e-21121170255
                         AP2   2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                 +y+GVr+++ +g+W+AeIrd +     + +r++lg+f+tae+Aa+a+++a+++++g
  Cotton_A_25722_BGI-A2_v1.0 121 RYRGVRQRP-WGKWAAEIRDpF-----KaARVWLGTFDTAEDAARAYDEAALRFRG 170
                                 7********.**********66.....56*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541714.05E-23121179IPR016177DNA-binding domain
SMARTSM003803.7E-37121184IPR001471AP2/ERF domain
PfamPF008472.1E-14121170IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.8E-33121179IPR001471AP2/ERF domain
PROSITE profilePS5103225.515121178IPR001471AP2/ERF domain
PRINTSPR003674.6E-12122133IPR001471AP2/ERF domain
CDDcd000187.30E-29129180No hitNo description
PRINTSPR003674.6E-12144160IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006970Biological Processresponse to osmotic stress
GO:0009749Biological Processresponse to glucose
GO:0009788Biological Processnegative regulation of abscisic acid-activated signaling pathway
GO:0050832Biological Processdefense response to fungus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MSVMVSALTH VVAGDVPADD EELSGNEYLD WRSNNINPSL GFGGLKRGRE EVDGCATGSG  60
GGGRMAVESV ANLCSQFVHL PHGGSSSAVA GVREANTPAQ LVPTYEYNSN ENNNREEPRR  120
RYRGVRQRPW GKWAAEIRDP FKAARVWLGT FDTAEDAARA YDEAALRFRG NKAKLNFPEN  180
VKLRSVPPNQ TATHFPISDS PNTLFSIPTS TDPIIHHSQS HYLVPNPQVA GGYLDYSQLV  240
LGSSTSSVPR EQQLQQLRQN QPIYPYDRTV LSSSESSQAQ SSSLSSSSPA SPPTSYPIVF  300
PLQASGYQFN LGNSSQGGGI GDFSVHSWSS DSNH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-24120181163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00584DAPTransfer from AT5G64750Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP2598090.0KP259809.1 Gossypium barbadense ethylene-responsive element binding protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017622525.10.0PREDICTED: ethylene-responsive transcription factor ABR1-like
TrEMBLA0A2P5XM210.0A0A2P5XM21_GOSBA; Uncharacterized protein
STRINGGorai.003G048800.11e-175(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64750.12e-26ERF family protein