PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_25838_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRAS
Protein Properties Length: 87aa    MW: 10259.7 Da    PI: 6.2423
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_25838_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS965.7e-30186289374
                        GRAS 289 llgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvS 371
                                 ++g+ei+n+vaceg er+erhe++++W  r+++aGFkpv + ++ +++ak + + ++ +gy++ +e++sl+++W+drpL++vS
  Cotton_A_25838_BGI-A2_v1.0   1 MFGKEIENIVACEGVEREERHERYGRWMVRFGQAGFKPVMMWHDSTEDAKQMEEACGRNGYKIVNERASLMICWHDRPLYAVS 83 
                                 599******************************************************************************** PP

                        GRAS 372 aWr 374
                                 aW+
  Cotton_A_25838_BGI-A2_v1.0  84 AWT 86 
                                 **6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF035142.0E-27186IPR005202Transcription factor GRAS
PROSITE profilePS5098513.861166IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 87 aa     Download sequence    Send to blast
MFGKEIENIV ACEGVEREER HERYGRWMVR FGQAGFKPVM MWHDSTEDAK QMEEACGRNG  60
YKIVNERASL MICWHDRPLY AVSAWTC
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017648552.16e-63PREDICTED: scarecrow-like protein 3
TrEMBLA0A0D2M1882e-60A0A0D2M188_GOSRA; Uncharacterized protein
STRINGGorai.001G207600.13e-61(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.13e-27scarecrow-like 3