PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_25876_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Dof

Protein Properties

Length: 259aa MW: 28307.1 Da PI: 8.7436

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_25876_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.6	1.5e-39	29	89	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 + ++l+cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGgg+rknk+ss Cotton_A_25876_BGI-A2_v1.0 29 PPEQLNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRSS 89 57899*****************************************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-26	28	87	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.2E-33	32	87	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.199	33	87	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	35	71	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 259 aa Download sequence Send to blast
MEEMMVANNN TCTKGTTTTT TVLEKKTRPP EQLNCPRCNS TNTKFCYYNN YSLTQPRYFC 60 KTCRRYWTEG GSLRNVPVGG GSRKNKRSSI STTSSSSSSS SSSSSSTAFA SDSAKVLDLN 120 PSTFSLLSSS QNPNKVHYKG QDLNLTFPPM QEPGLYDHQH NYYYYNNTGM VSRGLNSFVP 180 APAAPATPAP AALFSMQDYK PSLSSTTFPI HSGVQGFPFG EMKQVSSTNN EVDDDQNKEQ 240 SNSTGFWNNN GVLGGGGSW

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor specifically involved in the maternal control of seed germination. Regulates transcription by binding to a 5'-AA[AG]G-3' consensus core sequence. May ensure the inactivity of a component that would be activated to trigger germination as a consequence of red light perception.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	GQ393560	1e-103	GQ393560.1 Gossypium hirsutum cultivar Deltapine 33 B clone MONCS0525 SSR marker CGR5558 genomic sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017636663.1	0.0	PREDICTED: dof zinc finger protein DOF3.7-like
Swissprot	Q43385	6e-53	DOF37_ARATH; Dof zinc finger protein DOF3.7
TrEMBL	A0A1U8NJS1	1e-131	A0A1U8NJS1_GOSHI; dof zinc finger protein DOF3.7-like
STRING	Gorai.008G126800.1	1e-122	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM28385	3	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G61850.3	3e-48	Dof family protein