PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_26027_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 149aa    MW: 17552.5 Da    PI: 9.8789
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_26027_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B337.25.3e-12898190
                                EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEE CS
                          B3  1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvv 81
                                f k+l  s +  ++rl++p k   ++  + +++ +++ +++de+g+ W + +++rkk+g    vl+kGW  Fv+  +L+ gD+v 
  Cotton_A_26027_BGI-A2_v1.0  8 FMKIL--SRTDIKARLSIPTKKK-RCflNFQNRHQVEFKVKDENGKDWVFCCSIRKKKGYrkPVLSKGWLPFVRCWKLEIGDVVR 89
                                67777..66666788****9986.445855667889****************9966666566**********************9 PP

                                EEE-SSSEE CS
                          B3 82 Fkldgrsef 90
                                 +++ ++++
  Cotton_A_26027_BGI-A2_v1.0 90 VYRMMDKDG 98
                                996644333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.3E-18397IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.96E-13593IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.1926110IPR003340B3 DNA binding domain
CDDcd100171.32E-15696No hitNo description
PfamPF023621.3E-9898IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 149 aa     Download sequence    Send to blast
MAIEKPLFMK ILSRTDIKAR LSIPTKKKRC FLNFQNRHQV EFKVKDENGK DWVFCCSIRK  60
KKGYRKPVLS KGWLPFVRCW KLEIGDVVRV YRMMDKDGKE YYRIEVIKRR DSPLVRNHDA  120
EEPSALAVAS YGDVEEEAYE VGGEFLMNA
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2430830.0AC243083.1 Gossypioides kirkii clone GKH003A06-jng, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012459789.11e-104PREDICTED: uncharacterized protein LOC105780167
TrEMBLA0A0D2V6701e-103A0A0D2V670_GOSRA; Uncharacterized protein (Fragment)
STRINGGorai.012G167300.11e-104(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1783547
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21550.13e-09VP1/ABI3-like 3