PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_26028_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Protein Properties

Length: 296aa MW: 34031.9 Da PI: 8.9304

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_26028_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	30.7	5.6e-10	8	110	1	99
EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTE...EEE-TTHHHHHHHHT-- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgr...yvltkGWkeFvkangLk 75 f+k lt+ d k rl++p k ++ g + +++++++d + + W + +++r+ +++ vl++GW +Fv+ +L Cotton_A_26028_BGI-A2_v1.0 8 FIKRLTKTDIEK--RLSVPSKKK-RCflnfhG---RHKVDVKVKDDNAKDWLFGCSIRREKDAypkPVLSQGWLQFVRCWKLA 84 566665555544..488887764.33364423...35689*************999999998888************ PP TT-EEEEEE-.SS.SEE..EEEEE-S CS B3 76 egDfvvFkld.gr.sefelvvkvfrk 99 gD+v+ ++ ++ ++++++kv+r+ Cotton_A_26028_BGI-A2_v1.0 85 IGDMVIVNRVmEKdGKENYRIKVIRT 110 *****9553444888888888875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	9.5E-15	3	96	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	6.47E-9	5	94	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.20E-13	6	109	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 296 aa Download sequence Send to blast
MAIEKPVFIK RLTKTDIEKR LSVPSKKKRC FLNFHGRHKV DVKVKDDNAK DWLFGCSIRR 60 EKDAYPKPVL SQGWLQFVRC WKLAIGDMVI VNRVMEKDGK ENYRIKVIRT GVLPLVQNHD 120 ADRAIASNSS TARTITYDRT EGLRNLPKFI DFFELDSQQQ REMEHPSNLA LHNINVDEVP 180 INSSAAPYSK LHDANRVMAV ASYTKVEQEA TITFAGTEQT VSYDWTEGLH NQPGFMFEFI 240 SQKPDETDRK SRAIDCSDLG SQEQREMEHP SILALHNINM VKMPVTSSRT PCIKFF

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC243083	0.0	AC243083.1 Gossypioides kirkii clone GKH003A06-jng, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A2P5PXC7	0.0	A0A2P5PXC7_GOSBA; Uncharacterized protein
STRING	Gorai.012G167400.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM17835	4	7