PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_26043_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Protein Properties

Length: 275aa MW: 29705.6 Da PI: 4.8323

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_26043_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	30.7	5.5e-10	21	98	15	90
-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE CS B3 15 rlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgr.sef 90 rl +p k + + gg + ++l+ + W + +++rk++ + vl++GW++Fv +n+Lk+gD ++ + d + +++ Cotton_A_26043_BGI-A2_v1.0 21 RLAIPGKILPSLpsfnGGH---AVRIQLMY-GTEIWPIDCTVRKNGYKkPVLSGGWRKFVVDNELKTGDKITMYKDFEdEDG 98 4666666666665442222...22333333.4488999998855555559**********************9955333444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	2.7E-13	4	106	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.43E-12	4	106	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	4.10E-18	8	108	No hit	No description
SMART	SM01019	0.0026	9	110	IPR003340	B3 DNA binding domain
Pfam	PF02362	2.4E-7	20	98	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	9.812	52	110	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 275 aa Download sequence Send to blast
MASHPTEMFT KELTATDINR RLAIPGKILP SLPSFNGGHA VRIQLMYGTE IWPIDCTVRK 60 NGYKKPVLSG GWRKFVVDNE LKTGDKITMY KDFEDEDGGS HFRVKVEKPP VAKNQDRSHG 120 TLPSSVLAFN DHEVDRTNSG NEADRIPNKA LDDGAIKQEG GIPIMELPDV ATDTLVDGHV 180 IAKPSVTIFG AIMTDEMKSL GITEGTDMGE PSLLSPCMAK PEREIDFLGI AECGDAIAYG 240 SGPSDAAGEA CCNIITHHQS VSLDLVLSQP NPYAG

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX616349	0.0	JX616349.1 Gossypium hirsutum clone NBRI_GE60935 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012458573.1	1e-179	PREDICTED: uncharacterized protein LOC105779372
TrEMBL	A0A2P5YF99	0.0	A0A2P5YF99_GOSBA; Uncharacterized protein
STRING	Gorai.012G168700.1	1e-178	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM20789	3	6