PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_26046_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 277aa    MW: 29685.9 Da    PI: 6.1625
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_26046_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B334.82.9e-11993186
                                EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS.-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-E CS
                          B3  1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesg.rsWevkliyrkksgr.yvltkGWkeFvkangLkegDf 79
                                f k+l++ d +  +rl +p k + +     gg       + ++ + g + W + +++rk++ +  vl+ GW++Fv +n+Lk+gD+
  Cotton_A_26046_BGI-A2_v1.0  9 FSKKLKTTDIN--KRLAIPGKILPSLpafnGGH-----AVLIQLKYGtKIWPIGCTVRKNGYKkPVLSVGWRKFVADNKLKTGDI 86
                                55666444444..45888888887776443222.....23333333349******996555555********************* PP

                                EEEEE-S CS
                          B3 80 vvFkldg 86
                                ++ + d 
  Cotton_A_26046_BGI-A2_v1.0 87 ITMYKDF 93
                                **99442 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.5E-143105IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.16E-124104IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.9397110IPR003340B3 DNA binding domain
CDDcd100173.68E-177108No hitNo description
SMARTSM010199.5E-49105IPR003340B3 DNA binding domain
PfamPF023623.7E-81196IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MASQPTKMFS KKLKTTDINK RLAIPGKILP SLPAFNGGHA VLIQLKYGTK IWPIGCTVRK  60
NGYKKPVLSV GWRKFVADNK LKTGDIITMY KDFEDGDGGS HFRVEVEKRP AASNQDRSHE  120
TIPSSCVLAF NDHEVDGTNS GNEADRIPNK ALDDGAINLE GGIPIMEFPD VATDTLVDGH  180
VIAKPSVTIS GAIMTDEMKC LGITKGTDMG EPSLLLPCMA KAEREIDFLG IAEGGDAIAY  240
GSGPSDAAGE ACCNFITHHR SVTLDLVLSQ PNPYNAG
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6163490.0JX616349.1 Gossypium hirsutum clone NBRI_GE60935 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012458573.10.0PREDICTED: uncharacterized protein LOC105779372
TrEMBLA0A0D2S4820.0A0A0D2S482_GOSRA; Uncharacterized protein
STRINGGorai.012G168700.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2078936