PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_26079_BGI-A2_v1.0

Common Name

F383_09897

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

NF-YA

Protein Properties

Length: 160aa MW: 17917.1 Da PI: 10.0116

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_26079_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	106	3.2e-33	65	121	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep++VNaKQy++Il+RRq+Rak+e+e+kl +ksrkpylheSRh hAlrR+RgsgGrF Cotton_A_26079_BGI-A2_v1.0 65 EEPVFVNAKQYHGILRRRQSRAKAESENKL-AKSRKPYLHESRHLHALRRARGSGGRF 121 69**************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	1.4E-36	63	124	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	38.039	64	124	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	2.2E-28	66	121	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	5.6E-24	67	89	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	69	89	IPR018362	CCAAT-binding factor, conserved site
PRINTS	PR00616	5.6E-24	98	121	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 160 aa Download sequence Send to blast
MPYTTPQHAV APAAYPYPDP YYRSIFAPYD AQSYPPQPYG GQPMVHLQLM GIQQAGVPLP 60 SDAVEEPVFV NAKQYHGILR RRQSRAKAES ENKLAKSRKP YLHESRHLHA LRRARGSGGR 120 FLNSKKNENK QNEAAPSDKS QSNINLNSDK NELASTEGKC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	4e-22	64	129	1	66	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM422775	1e-62	AM422775.1 Antirrhinum majus mRNA for YA6 (nf-YA gene).

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016749806.1	1e-116	PREDICTED: nuclear transcription factor Y subunit A-7-like
Refseq	XP_016749808.1	1e-116	PREDICTED: nuclear transcription factor Y subunit A-7-like
Refseq	XP_017641532.1	1e-116	PREDICTED: nuclear transcription factor Y subunit A-7-like
Refseq	XP_017641533.1	1e-116	PREDICTED: nuclear transcription factor Y subunit A-7-like
Refseq	XP_017642281.1	1e-116	PREDICTED: nuclear transcription factor Y subunit A-7-like
Refseq	XP_017642282.1	1e-116	PREDICTED: nuclear transcription factor Y subunit A-7-like
Swissprot	Q84JP1	6e-65	NFYA7_ARATH; Nuclear transcription factor Y subunit A-7
TrEMBL	A0A0B0NSG0	1e-114	A0A0B0NSG0_GOSAR; Nuclear transcription factor Y subunit A-7-like protein
TrEMBL	A0A1U8PF16	1e-114	A0A1U8PF16_GOSHI; nuclear transcription factor Y subunit A-7-like
TrEMBL	A0A2P5XWA8	1e-114	A0A2P5XWA8_GOSBA; Uncharacterized protein
STRING	Gorai.009G115000.1	1e-115	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4168	27	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G30500.2	4e-53	nuclear factor Y, subunit A7

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]