PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_26093_BGI-A2_v1.0

Common Name

F383_21682

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 434aa MW: 47527 Da PI: 6.1798

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_26093_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.3	6.6e-09	263	310	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq Cotton_A_26093_BGI-A2_v1.0 263 SHSLAERVRREKISERMKFLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 310 8***********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	2.88E-17	257	328	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.66E-11	257	314	No hit	No description
PROSITE profile	PS50888	15.663	259	309	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.6E-17	259	328	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	5.5E-6	263	310	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.5E-10	265	315	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 434 aa Download sequence Send to blast
MSEELKNRTT TRQQQPAWNP CGFMTEMSAN ELNCGTEQVG NYFFNPNWDN SMDQSDPFES 60 ALSSMVSSPA ASNVGSGENV MMRELIGRLG NICNSKDIIT NSTNVSCYST PLNSPPFSTD 120 PGFAERAARF SCFGGLNDPL RDSLKLSGHV NGSQTINNST LSRSSSPENA ESGVSKEESS 180 VSEQLPGGNT KKRKSIPRGK AKETPSPATV DAKVAAENND ESNAKRSKQN GTVKASNKED 240 SKPAEPPKDY IHVRARRGQA TDSHSLAERV RREKISERMK FLQDLVPGCN KVTGKAVMLD 300 EIINYVQSLQ RQVEFLSMKL STVNPRMDVN METLLSKDMF QSRGLLPHTV YSMEPTFPFG 360 YQPQQGLALN NGIANTTSQQ GFQLPQVNGF IDGNPQVGSI WEDDLQSIVQ MGFGQNQAQC 420 YQGSIAPGQV KIEL

Sequence ? help Back to Top

Protein Sequence Length: 434 aa Download sequence Send to blast

MSEELKNRTT TRQQQPAWNP CGFMTEMSAN ELNCGTEQVG NYFFNPNWDN SMDQSDPFES  60
ALSSMVSSPA ASNVGSGENV MMRELIGRLG NICNSKDIIT NSTNVSCYST PLNSPPFSTD  120
PGFAERAARF SCFGGLNDPL RDSLKLSGHV NGSQTINNST LSRSSSPENA ESGVSKEESS  180
VSEQLPGGNT KKRKSIPRGK AKETPSPATV DAKVAAENND ESNAKRSKQN GTVKASNKED  240
SKPAEPPKDY IHVRARRGQA TDSHSLAERV RREKISERMK FLQDLVPGCN KVTGKAVMLD  300
EIINYVQSLQ RQVEFLSMKL STVNPRMDVN METLLSKDMF QSRGLLPHTV YSMEPTFPFG  360
YQPQQGLALN NGIANTTSQQ GFQLPQVNGF IDGNPQVGSI WEDDLQSIVQ MGFGQNQAQC  420
YQGSIAPGQV KIEL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017616836.1	0.0	PREDICTED: transcription factor bHLH62
Swissprot	Q9SRT2	1e-99	BH062_ARATH; Transcription factor bHLH62
TrEMBL	A0A0B0NZG8	0.0	A0A0B0NZG8_GOSAR; Transcription factor bHLH62-like protein
STRING	Gorai.005G022400.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2332	27	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07340.1	1e-100	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]