PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_26121_BGI-A2_v1.0
Common NameF383_01616
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family AP2
Protein Properties Length: 427aa    MW: 47250.9 Da    PI: 5.9925
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_26121_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.75.1e-17147196155
                         AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                 s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  Cotton_A_26121_BGI-A2_v1.0 147 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 196
                                 78*******************......55************************997 PP
2AP238.82.3e-12239289155
                         AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                 s+y+GV+ +k  grW+A+   +     +k+++lg f+ + +Aa+a+++a+ k +g
  Cotton_A_26121_BGI-A2_v1.0 239 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDNEVDAARAYDKAAIKCNG 289
                                 89********.7******5553..2.26**********99**********99776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541714.84E-16147206IPR016177DNA-binding domain
PfamPF008474.7E-9147196IPR001471AP2/ERF domain
PROSITE profilePS5103217.899148204IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.7E-17148204IPR001471AP2/ERF domain
CDDcd000181.19E-11148206No hitNo description
SMARTSM003808.4E-33148210IPR001471AP2/ERF domain
CDDcd000185.48E-25239299No hitNo description
SuperFamilySSF541711.63E-16239298IPR016177DNA-binding domain
PfamPF008473.4E-7239289IPR001471AP2/ERF domain
PROSITE profilePS5103215.106240297IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-15240297IPR001471AP2/ERF domain
SMARTSM003803.3E-31240303IPR001471AP2/ERF domain
PRINTSPR003674.2E-6241252IPR001471AP2/ERF domain
PRINTSPR003674.2E-6279299IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 427 aa     Download sequence    Send to blast
MLDLNLNVGS TESAQDSNSA APFSTERNGD CGNQMDESGT SNSSIVNDDD ESCSTRANGD  60
AFTLCFDILK VGSGGNDFQN DDADVVVTRE LFPATRVGIS EGQSSGNNNK WIDHSFERKE  120
ADESLVIRQQ PSQTSKKSRR GPRSRSSQYR GVTFYRRTGR WESHIWDCGK QVYLGGFDTA  180
HAAARAYDRA AIKFRGVDAD INFSVSDYEE DMKQMKNLCK EEFVHILRRQ STGFSRGSSK  240
YRGVTLHKCG RWEARMGQFL GKKYIYLGLF DNEVDAARAY DKAAIKCNGR EAVTNFEPST  300
YEGEIIFDTS TNEGNSHNLD LNLGICPPVG NDPKENEQQH HHFHSGPHDV HEGKSSGERD  360
WAWQMHGARP MPPLLPAAAS SGFSFLATPP SAAILPSNLT TPSFHFATPT ATTATPQIYI  420
HMEEPPP
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ5265333e-62HQ526533.1 Gossypium herbaceum clone NBRI_E_EYT27PB03GB2FT simple sequence repeat marker, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017638978.10.0PREDICTED: ethylene-responsive transcription factor RAP2-7-like isoform X1
SwissprotQ9SK031e-112RAP27_ARATH; Ethylene-responsive transcription factor RAP2-7
TrEMBLA0A0B0NBP70.0A0A0B0NBP7_GOSAR; Ethylene-responsive transcription factor RAP2-7-like protein
STRINGGorai.004G002100.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58612747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.31e-122related to AP2.7