PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_26239_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ARR-B
Protein Properties Length: 417aa    MW: 47114.8 Da    PI: 5.6164
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_26239_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like71.21.6e-22197253156
                     G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPkti...lelmkvkgLtlehvkSHLQkYRla 56 
                                 kpr+ Wt+eLH+ Fv av+qL   ++A+Pk+i   +++m+v gL++++++SHLQkYRl+
  Cotton_A_26239_BGI-A2_v1.0 197 KPRVIWTQELHDIFVIAVNQL--RQQAVPKKIlerMQAMNVTGLSRANIASHLQKYRLH 253
                                 79*******************..*********33335789*****************97 PP
2Response_reg70.19.2e-24151211107
                                 EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTT CS
                Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahg 81 
                                 vl+vdD+++ + +l+++l+k  y ev++++ ++ al+ll+e +  +D++l+D+ mp++dGl+ll+ i  e  +lp++++++ +
  Cotton_A_26239_BGI-A2_v1.0  15 VLVVDDNRTCLLVLETMLRKLSY-EVTTCQLARHALALLREDKnrFDIVLCDLHMPELDGLKLLEIIGLEM-DLPVVMMSSDD 95 
                                 89*********************.***************887778********************996644.8********** PP

                                 THHHHHHHHHTTESEEEESS--HHHH CS
                Response_reg  82 eeedalealkaGakdflsKpfdpeel 107
                                  +  + + +  Ga d+l+Kp+++e++
  Cotton_A_26239_BGI-A2_v1.0  96 GKGVIMKGIIHGACDYLVKPVQMEAV 121
                                 ********************999875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23006.2E-3712166No hitNo description
SuperFamilySSF521721.57E-3212144IPR011006CheY-like superfamily
SMARTSM004481.9E-2613125IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011039.89914129IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.2E-2015121IPR001789Signal transduction response regulator, receiver domain
CDDcd001562.05E-2416128No hitNo description
SuperFamilySSF466891.0E-14194256IPR009057Homeodomain-like
PROSITE profilePS5129411.06194255IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.7E-22195256IPR009057Homeodomain-like
TIGRFAMsTIGR015571.5E-18197253IPR006447Myb domain, plants
PfamPF002497.0E-6202251IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 417 aa     Download sequence    Send to blast
MDGGFDGDFP AGLKVLVVDD NRTCLLVLET MLRKLSYEVT TCQLARHALA LLREDKNRFD  60
IVLCDLHMPE LDGLKLLEII GLEMDLPVVM MSSDDGKGVI MKGIIHGACD YLVKPVQMEA  120
VRLIWQHVVR KRQRALEDFQ QLRGNIHATG RTLLLKQAKN AVDQMPARER RILKRERENE  180
DEDDEGELSE EVTTAKKPRV IWTQELHDIF VIAVNQLRQQ AVPKKILERM QAMNVTGLSR  240
ANIASHLQKY RLHLRKGGGQ PLADNRNVNL NPSIGQASSF NQFNLQFQQP TAIGSSCNQL  300
PMQNLMITPQ PCTINDSVVP DSTQCFPTEL STNDLSQPNL LFQNDVPTSN VEHLYRNVGV  360
NVSELSNPIS SVDDSSVDQL IYEPSFLVRQ YDPEDFFHGG FPRSDSYVSV HCNLIFL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A9e-15193256162ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins. Involved in the expression of nuclear genes for components of mitochondrial complex I. Promotes cytokinin-mediated leaf longevity. Involved in the ethylene signaling pathway in an ETR1-dependent manner and in the cytokinin signaling pathway. {ECO:0000269|PubMed:11370868, ECO:0000269|PubMed:11574878, ECO:0000269|PubMed:15282545, ECO:0000269|PubMed:16407152}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016747629.10.0PREDICTED: two-component response regulator ARR2-like
SwissprotQ9ZWJ91e-83ARR2_ARATH; Two-component response regulator ARR2
TrEMBLA0A2P5XNW70.0A0A2P5XNW7_GOSBA; Uncharacterized protein
STRINGGorai.001G142000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2231845
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16857.16e-78response regulator 1
Publications ? help Back to Top
  1. Takahashi N, et al.
    Cytokinins control endocycle onset by promoting the expression of an APC/C activator in Arabidopsis roots.
    Curr. Biol., 2013. 23(18): p. 1812-7
    [PMID:24035544]
  2. Ge XM, et al.
    Heterotrimeric G protein mediates ethylene-induced stomatal closure via hydrogen peroxide synthesis in Arabidopsis.
    Plant J., 2015. 82(1): p. 138-50
    [PMID:25704455]
  3. Takahashi N,Umeda M
    Cytokinins promote onset of endoreplication by controlling cell cycle machinery.
    Plant Signal Behav, 2014. 9(8): p. e29396
    [PMID:25763620]
  4. Kobayashi K, et al.
    Shoot Removal Induces Chloroplast Development in Roots via Cytokinin Signaling.
    Plant Physiol., 2017. 173(4): p. 2340-2355
    [PMID:28193764]
  5. Arnaud D, et al.
    Cytokinin-Mediated Regulation of Reactive Oxygen Species Homeostasis Modulates Stomatal Immunity in Arabidopsis.
    Plant Cell, 2017. 29(3): p. 543-559
    [PMID:28254779]
  6. Zhang TQ, et al.
    A Two-Step Model for de Novo Activation of WUSCHEL during Plant Shoot Regeneration.
    Plant Cell, 2017. 29(5): p. 1073-1087
    [PMID:28389585]
  7. Meng WJ, et al.
    Type-B ARABIDOPSIS RESPONSE REGULATORs Specify the Shoot Stem Cell Niche by Dual Regulation of WUSCHEL.
    Plant Cell, 2017. 29(6): p. 1357-1372
    [PMID:28576846]
  8. Zhang F,May A,Irish VF
    Type-B ARABIDOPSIS RESPONSE REGULATORs Directly Activate WUSCHEL.
    Trends Plant Sci., 2017. 22(10): p. 815-817
    [PMID:28886911]
  9. Takatsuka H,Higaki T,Umeda M
    Actin Reorganization Triggers Rapid Cell Elongation in Roots.
    Plant Physiol., 2018. 178(3): p. 1130-1141
    [PMID:30185441]