PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_26258_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 370aa    MW: 42792.5 Da    PI: 6.3959
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_26258_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3986e-31118209187
                                 EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-E CS
                          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDf 79 
                                 f+kv tpsdv+k++rlv+pk++ae++    +++ e++  l +ed++g++W+++++y+++s++yv+tkGW++Fvk+++L +gD+
  Cotton_A_26258_BGI-A2_v1.0 118 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldSSSIEKGLLLNFEDRNGKTWRFRYSYWNSSQSYVMTKGWSRFVKEKKLVAGDT 200
                                 89***************************955556888********************************************* PP

                                 EEEEE-.SS CS
                          B3  80 vvFkld.gr 87 
                                 v F++  g+
  Cotton_A_26258_BGI-A2_v1.0 201 VSFQRGvGE 209
                                 ****54233 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.7E-40112220IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.46E-30115206IPR015300DNA-binding pseudobarrel domain
CDDcd100175.74E-27116217No hitNo description
PfamPF023622.5E-28118217IPR003340B3 DNA binding domain
PROSITE profilePS5086313.987118220IPR003340B3 DNA binding domain
SMARTSM010193.2E-22118214IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MMNFVEEEEE KGYYCNNEDQ EEDDEEVVMI REISSNNFPF SSPSSSSVSS KYKDAAAAAV  60
HLSLGTFDSR QDHNKTQQQS GFDFDKKQDL VMDLSLGNHK NNDHEESCYE SVEKEHMFDK  120
VVTPSDVGKL NRLVIPKQHA EKYFPLDSSS IEKGLLLNFE DRNGKTWRFR YSYWNSSQSY  180
VMTKGWSRFV KEKKLVAGDT VSFQRGVGES VKARLYIDWK LRPNALDPSP FAHIQLRNQF  240
NFLQPVRWEP ICISRNYQPL HRLNYSIYPY NHRHQHHFQH QHQQQAITYS NMSQYYQIGA  300
LQGEPMVIDS VPVIEANNNK TSAKRLRLFG VNMDCPNPTQ DESSSSIPLS NTQAEYSNKG  360
KSSLSIDLEL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A4e-611122252116B3 domain-containing transcription factor NGA1
5os9_B4e-611122252116B3 domain-containing transcription factor NGA1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtRegulates lateral organ growth. Functionally redundant with NGA2, NGA3 and NGA4. {ECO:0000269|PubMed:16603651}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6166620.0JX616662.1 Gossypium hirsutum clone NBRI_GE61480 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016708797.10.0PREDICTED: B3 domain-containing transcription factor NGA1-like
SwissprotO827991e-73NGA1_ARATH; B3 domain-containing transcription factor NGA1
TrEMBLA0A1U8L2F40.0A0A1U8L2F4_GOSHI; B3 domain-containing transcription factor NGA1-like
STRINGGorai.008G132400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2484534
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.12e-72B3 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Lee BH, et al.
    The Arabidopsis thaliana NGATHA transcription factors negatively regulate cell proliferation of lateral organs.
    Plant Mol. Biol., 2015. 89(4-5): p. 529-38
    [PMID:26433582]
  3. Lozano-Sotomayor P, et al.
    Altered expression of the bZIP transcription factor DRINK ME affects growth and reproductive development in Arabidopsis thaliana.
    Plant J., 2016. 88(3): p. 437-451
    [PMID:27402171]
  4. Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL
    Active suppression of a leaf meristem orchestrates determinate leaf growth.
    Elife, 2017.
    [PMID:27710768]
  5. Sasnauskas G,Manakova E,Lapėnas K,Kauneckaitė K,Siksnys V
    DNA recognition by Arabidopsis transcription factors ABI3 and NGA1.
    FEBS J., 2018. 285(21): p. 4041-4059
    [PMID:30183137]
  6. Sato H, et al.
    Arabidopsis thaliana NGATHA1 transcription factor induces ABA biosynthesis by activating NCED3 gene during dehydration stress.
    Proc. Natl. Acad. Sci. U.S.A., 2018. 115(47): p. E11178-E11187
    [PMID:30397148]