PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_26283_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bZIP

Protein Properties

Length: 445aa MW: 49441.7 Da PI: 8.4855

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_26283_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	33.4	1e-10	182	223	4	45
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 k rr+++NReAAr+sR+RKka++++Le +L++ ++L Cotton_A_26283_BGI-A2_v1.0 182 AKTLRRLAQNREAARKSRLRKKAYVQQLESSRIKLTQLEQDL 223 6889*************************9777777666655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	9.1E-9	179	246	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.186	181	225	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	6.6E-8	182	224	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	4.5E-7	183	225	No hit	No description
CDD	cd14708	2.84E-22	183	235	No hit	No description
Gene3D	G3DSA:1.20.5.170	5.3E-8	184	227	No hit	No description
PROSITE pattern	PS00036	0	186	201	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	3.0E-32	251	326	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 445 aa Download sequence Send to blast
MANHRVGETG LTDSGPSSNH HHHHHNIPYA VLHGMNVPQS FMHQEGPAFD FGELEEAIVL 60 QGVKIRNDEA KPPLFTAGRP AATLEMFPSW PMRFQQTPRG SSKSGGESTD SGSGVNTISS 120 KTENQVEPES PISKKTSSLD QQQQVDMASD ISRTGTSHNQ SAAAKTPQEK RRGSTSEKQL 180 DAKTLRRLAQ NREAARKSRL RKKAYVQQLE SSRIKLTQLE QDLQRARSQG FFLGGCAGTV 240 GNISSEDDQR HMSELRTGLN AHLSDSDLRI IVDSYISHYD EIFRLKVAAA KADVFHLITG 300 MWTTPAERCF LWMGGFRPSD LIKMLISQLD PLTEQQVMGI YSLQHSSQQA EEALTQGLEQ 360 LQQSLIDTIA GGPVIDGMQQ MAVALGKLAN LEGFVRQADN LRQQTLHQLS RILTVRQAAR 420 CFLMIGEYYG RLRALSSLWA SRPRE

Sequence ? help Back to Top

Protein Sequence Length: 445 aa Download sequence Send to blast

MANHRVGETG LTDSGPSSNH HHHHHNIPYA VLHGMNVPQS FMHQEGPAFD FGELEEAIVL  60
QGVKIRNDEA KPPLFTAGRP AATLEMFPSW PMRFQQTPRG SSKSGGESTD SGSGVNTISS  120
KTENQVEPES PISKKTSSLD QQQQVDMASD ISRTGTSHNQ SAAAKTPQEK RRGSTSEKQL  180
DAKTLRRLAQ NREAARKSRL RKKAYVQQLE SSRIKLTQLE QDLQRARSQG FFLGGCAGTV  240
GNISSEDDQR HMSELRTGLN AHLSDSDLRI IVDSYISHYD EIFRLKVAAA KADVFHLITG  300
MWTTPAERCF LWMGGFRPSD LIKMLISQLD PLTEQQVMGI YSLQHSSQQA EEALTQGLEQ  360
LQQSLIDTIA GGPVIDGMQQ MAVALGKLAN LEGFVRQADN LRQQTLHQLS RILTVRQAAR  420
CFLMIGEYYG RLRALSSLWA SRPRE

Functional Description ? help Back to Top
Source	Description
UniProt	Together with TGA10, basic leucine-zipper transcription factor required for anther development, probably via the activation of SPL expression in anthers and via the regulation of genes with functions in early and middle tapetal development (PubMed:20805327). Required for signaling responses to pathogen-associated molecular patterns (PAMPs) such as flg22 that involves chloroplastic reactive oxygen species (ROS) production and subsequent expression of H(2)O(2)-responsive genes (PubMed:27717447). {ECO:0000269\|PubMed:20805327, ECO:0000269\|PubMed:27717447}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00131	DAP	Transfer from AT1G08320	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by flg22 in leaves. {ECO:0000269\|PubMed:27717447}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX580227	1e-103	JX580227.1 Gossypium hirsutum clone NBRI_GE12616 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017609047.1	0.0	PREDICTED: transcription factor TGA2-like isoform X1
Swissprot	Q93XM6	0.0	TGA9_ARATH; Transcription factor TGA9
TrEMBL	A0A1U8I048	0.0	A0A1U8I048_GOSHI; transcription factor TGA2-like
STRING	Gorai.006G111800.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5524	24	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08320.3	0.0	bZIP family protein

Publications ? help Back to Top
Gutsche N,Zachgo S The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding. PLoS ONE, 2016. 11(4): p. e0153810 [PMID:27128442] Noshi M,Mori D,Tanabe N,Maruta T,Shigeoka S Arabidopsis clade IV TGA transcription factors, TGA10 and TGA9, are involved in ROS-mediated responses to bacterial PAMP flg22. Plant Sci., 2016. 252: p. 12-21 [PMID:27717447] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]