PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_26358_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 397aa    MW: 44338.5 Da    PI: 4.9745
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_26358_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.73.6e-151461148
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
             Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                +grWT+eEd ll ++++  G g+W++ ++  g+ R++k+c++rw +yl
  Cotton_A_26358_BGI-A2_v1.0 14 KGRWTAEEDVLLTKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYL 61
                                79******************************99************97 PP
2Myb_DNA-binding55.11.7e-1767112148
                                 TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
             Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                 rg++T +E+e ++++++ lG++ W++Ia++++ gRt++++k++w+++l
  Cotton_A_26358_BGI-A2_v1.0  67 RGNFTSQEEEVIINLHTTLGNR-WSLIASYLP-GRTDNEIKNYWNSHL 112
                                 89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.8E-21564IPR009057Homeodomain-like
PROSITE profilePS5129415.106961IPR017930Myb domain
SuperFamilySSF466892.6E-2811108IPR009057Homeodomain-like
SMARTSM007173.1E-111363IPR001005SANT/Myb domain
PfamPF002491.9E-131461IPR001005SANT/Myb domain
CDDcd001674.25E-81661No hitNo description
PROSITE profilePS5129424.71962116IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.7E-2565116IPR009057Homeodomain-like
SMARTSM007172.1E-1566114IPR001005SANT/Myb domain
PfamPF002491.2E-1467112IPR001005SANT/Myb domain
CDDcd001672.46E-1069112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
MGRAPCCEKV GLKKGRWTAE EDVLLTKYIQ ANGEGSWRSL PKNAGLLRCG KSCRLRWINY  60
LRADLKRGNF TSQEEEVIIN LHTTLGNRWS LIASYLPGRT DNEIKNYWNS HLSRKIHSFR  120
RPLTQSMPVI MDLTKTAVIA KRKGGRNSKG SMKEIKSRST AKDTGSCSNK PAENVCVNEV  180
VPIPSTPLLE KETLSTTAIE DRMVLEERTT HVVPSPCQDT VVEGMLGSSE ERESLVSEEG  240
TIENSMQCPS GNAEKGTGIL APHESIDSSE IEWFNDILDS ELLQPSGDLT FTELGEDSGN  300
MKTHTTSANN EETVSRNCSA DSGGDLSSCT STTFYFVDDW EWENVVPRSE LWDEKDYMCS  360
WLWEPSDYHG KGERHKVDDN GFEGHNPMIA ANALLFS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-241211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00627PBMTransfer from PK06182.1Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF0341320.0AF034132.1 Gossypium hirsutum MYB-like DNA-binding domain protein (MYB4) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017645341.10.0PREDICTED: myb-related protein 315
TrEMBLA0A2P5YCY00.0A0A2P5YCY0_GOSBA; Uncharacterized protein
STRINGGorai.001G143200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17349511
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47460.12e-74myb domain protein 12