PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_26389_BGI-A2_v1.0
Common NameF383_16312
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family Dof
Protein Properties Length: 321aa    MW: 35065.1 Da    PI: 8.8539
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_26389_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof123.38.1e-3970129362
                      zf-Dof   3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                                  +alkcprC+stntkfCy+nnyslsqPr+fCk+CrryWt+GGalrnvPvGgg+r+nk+s+
  Cotton_A_26389_BGI-A2_v1.0  70 ASALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRSK 129
                                 6789*****************************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074786.0E-2956118IPR003851Zinc finger, Dof-type
PfamPF027011.0E-3272127IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.60973127IPR003851Zinc finger, Dof-type
PROSITE patternPS01361075111IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009640Biological Processphotomorphogenesis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MVFSSLPSYL DPPNWQQPPF LQQPGVITSE NHHNSQLPPP APPSAGGGAG GIRPGSMVER  60
ARLAKIPHPA SALKCPRCES TNTKFCYFNN YSLSQPRHFC KTCRRYWTRG GALRNVPVGG  120
GCRRNKRSKG RKRSKSPSVT SERQTGSSSS ATTINSNGCT EMLSHVNPAA APQLPPLGPL  180
HHLGDYNSGD IEVTFGDETR IMSSNGIGLM LPDWRSAQQV QQFPFLTSVD HPQTGLYSFV  240
NETMEPTGYA GQQQQLGSKP LESTITESSA VKMEETPSPW LNPSRNFLGN SGNDDQYWFF  300
GGGNPWTDLS GFTSSSITHF F
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00407DAPTransfer from AT3G55370Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017605440.10.0PREDICTED: dof zinc finger protein DOF3.6-like isoform X1
TrEMBLA0A0B0NE190.0A0A0B0NE19_GOSAR; Dof zinc finger DOF3.6-like protein
STRINGGorai.009G319300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17132886
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55370.16e-41OBF-binding protein 3