PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_26457_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 357aa    MW: 40308.5 Da    PI: 4.222
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_26457_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.39.8e-101445132
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT CS
             Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg 32
                                +grWT+eEde+l ++++ +G g+W++ ++  g
  Cotton_A_26457_BGI-A2_v1.0 14 KGRWTAEEDEILTKYIQTHGEGSWRSLPKNAG 45
                                79***********************9998766 PP
2Myb_DNA-binding51.22.8e-164685748
                                HHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
             Myb_DNA-binding  7 eEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                eEdel++++++ lG++ W++Ia++++ gRt++++k++w+++l
  Cotton_A_26457_BGI-A2_v1.0 46 EEDELIIKLHQSLGNR-WSLIASHLP-GRTDNEIKNYWNSHL 85
                                9***************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.0E-11543IPR009057Homeodomain-like
SuperFamilySSF466894.49E-201181IPR009057Homeodomain-like
SMARTSM007172.2E-171387IPR001005SANT/Myb domain
PfamPF002493.6E-71444IPR001005SANT/Myb domain
PROSITE profilePS5129418.0062989IPR017930Myb domain
CDDcd001676.46E-124685No hitNo description
Gene3DG3DSA:1.10.10.606.2E-224685IPR009057Homeodomain-like
PfamPF002491.8E-144685IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MGRAPCCEKV GLKKGRWTAE EDEILTKYIQ THGEGSWRSL PKNAGEEDEL IIKLHQSLGN  60
RWSLIASHLP GRTDNEIKNY WNSHLSTKMY CFRRLSNQSL PVILNVTERK GGRKGMKDNQ  120
GHSTKTENNG NSSSNKPMEV FIDEVVPFPS TPSLEKETFP SAVEDSMHLD PYEEDNERRI  180
GVMPGSCQHT GDGDGYVENS MLCPTATDSV VEKETDIFSL FESNESSGML CFDNILDNEL  240
LQTNGDSTLS QWGLNQVSVD LENSGDLCPN RPAAINKQVE SGDCGTGDLT TYFCTTSCFF  300
DDCEVENILD WDWERNELWD EKECIMPSWL WELDYNDKDD RLTLENNDLE LRGSAVA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-13128925128MYB TRANSFORMING PROTEIN
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY1155221e-39AY115522.1 Gossypium hirsutum myb-like transcription factor 4 (MYB4) gene, complete sequence.
GenBankAY1155231e-39AY115523.1 Gossypium raimondii myb-like transcription factor 4 (MYB4) gene, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017628554.10.0PREDICTED: transcription factor MYB12-like
TrEMBLA0A1U8L3W20.0A0A1U8L3W2_GOSHI; transcription repressor MYB4-like isoform X2
STRINGGorai.007G124000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17349511
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49330.11e-48myb domain protein 111