PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_26782_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB_related
Protein Properties Length: 143aa    MW: 16980.5 Da    PI: 10.2384
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_26782_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.13.5e-174286147
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
             Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                                r +WT+eE++++++a +++G g W+ I +++g ++++ q++s+ qk+
  Cotton_A_26782_BGI-A2_v1.0 42 REKWTEEEHQRFLEALRLYGRG-WRQIEEHVG-TKSADQIRSHAQKF 86
                                789*******************.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.9813791IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.2E-94082IPR009057Homeodomain-like
SMARTSM007176.9E-124189IPR001005SANT/Myb domain
PfamPF002493.5E-154285IPR001005SANT/Myb domain
SuperFamilySSF466897.48E-154290IPR009057Homeodomain-like
TIGRFAMsTIGR015571.8E-164289IPR006447Myb domain, plants
CDDcd001677.77E-104487No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 143 aa     Download sequence    Send to blast
MGQIQYSEKY FDDTYENRRL VVRMHWYRVN AKLTSSSYCI CREKWTEEEH QRFLEALRLY  60
GRGWRQIEEH VGTKSADQIR SHAQKFFSKV VRESNGGFDG SIKPVVIPPP RLKRKQVHPY  120
PRKSVYLVKG IFISSLINLN NQC
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtTranscription factor involved in phytochrome A-mediated cotyledon opening. Controlled by the central oscillator mediated by LHY and CCA1. Part of a regulatory circadian feedback loop. Regulates its own expression. {ECO:0000269|PubMed:14523250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation. Peak of transcript abundance near subjective dawn. Up-regulated transiently by red light and far red light. {ECO:0000269|PubMed:14523250, ECO:0000269|PubMed:19805390}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016744075.16e-46PREDICTED: protein REVEILLE 7-like isoform X3
RefseqXP_016744076.16e-46PREDICTED: protein REVEILLE 7-like isoform X3
RefseqXP_016744077.16e-46PREDICTED: protein REVEILLE 7-like isoform X3
RefseqXP_016744078.16e-46PREDICTED: protein REVEILLE 7-like isoform X3
SwissprotB3H5A86e-32RVE7_ARATH; Protein REVEILLE 7
SwissprotF4J2J64e-32RVE7L_ARATH; Protein REVEILLE 7-like
TrEMBLA0A2P5W5B62e-74A0A2P5W5B6_GOSBA; Uncharacterized protein
STRINGGorai.001G069700.17e-45(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM91742738
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18330.11e-34MYB_related family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]