PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_26935_BGI-A2_v1.0
Common NameF383_24009
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family LBD
Protein Properties Length: 224aa    MW: 24268.8 Da    PI: 8.4291
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_26935_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26094.98.7e-302103197
                      DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavg 78 
                                 +C++C+vlr++C+++C+l+ ++     p++q  ++ +v+k+FG++ ++++++a+pe +r+++++sl++eA+ r+ +Pv+Gavg
  Cotton_A_26935_BGI-A2_v1.0   2 SCNGCRVLRKGCSDSCILRSCLqwidnPESQGFATLFVAKFFGRAGLMSFISAVPEPQRPALFQSLLFEACGRTVNPVNGAVG 84 
                                 6*************************99******************************************************* PP

                      DUF260  79 vilklqqqleqlkaelall 97 
                                 ++++++++++q+++e++l+
  Cotton_A_26935_BGI-A2_v1.0  85 LLWAGNWHVCQAAVETVLR 103
                                 *************999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089118.4471107IPR004883Lateral organ boundaries, LOB
PfamPF031955.9E-252101IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSDSCILR SCLQWIDNPE SQGFATLFVA KFFGRAGLMS FISAVPEPQR  60
PALFQSLLFE ACGRTVNPVN GAVGLLWAGN WHVCQAAVET VLRGGTLRPI PELHAPTESN  120
EASEAAGTAD MWKLQETATS LNSNCRFSTS RSKVSSHKRR TIGELKKLQP SDLDLCLTPS  180
FKGNRVLDNR RPGTPSLISD ESVMTATCTE SGFAGQGKLL NLFV
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017605570.11e-165PREDICTED: LOB domain-containing protein 39-like
SwissprotQ9SZE85e-79LBD39_ARATH; LOB domain-containing protein 39
TrEMBLA0A0B0NW331e-163A0A0B0NW33_GOSAR; LOB domain-containing 39-like protein
STRINGGorai.007G056300.11e-151(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM82128122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37540.12e-81LOB domain-containing protein 39