PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_26995_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 180aa    MW: 20641.2 Da    PI: 7.4383
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_26995_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP238.52.9e-1275117348
                         AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaia 48 
                                 y+GVr++  +g ++AeIrd + ng  +r++lg++ t+++Aa a+++
  Cotton_A_26995_BGI-A2_v1.0  75 YRGVRRRL-SGTYAAEIRDLKRNG--ARIWLGTYETPDGAALAYVE 117
                                 9****888.8*********54454..******************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103214.73774115IPR001471AP2/ERF domain
SMARTSM003801.8E-1074124IPR001471AP2/ERF domain
CDDcd000189.26E-1574115No hitNo description
Gene3DG3DSA:3.30.730.101.5E-1674120IPR001471AP2/ERF domain
SuperFamilySSF541711.57E-1175117IPR016177DNA-binding domain
PRINTSPR003675.1E-67586IPR001471AP2/ERF domain
PfamPF008476.8E-775117IPR001471AP2/ERF domain
PRINTSPR003675.1E-698114IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MILIQFQDRE NPRKNELHDD AINVDQWINF DQLFDATEET DAVNNASFPS FEVSFQMETT  60
AAVPKPHAPP KKFNYRGVRR RLSGTYAAEI RDLKRNGARI WLGTYETPDG AALAYVEPVR  120
VSSKKRRSPE PLASCSWSQS PSSAWDKGTP KLKRRSEIKT EFEVDMYHLV PTEFCQTLIC
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012473780.11e-100PREDICTED: ethylene-responsive transcription factor 2-like
TrEMBLA0A2P5Y2C11e-105A0A2P5Y2C1_GOSBA; Uncharacterized protein
STRINGGorai.004G070600.11e-100(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.12e-17ethylene-responsive element binding factor 13