PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_27017_BGI-A2_v1.0
Common NameF383_21652
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family CO-like
Protein Properties Length: 417aa    MW: 46217.1 Da    PI: 7.2677
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_27017_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box30.57.7e-101153440
                    zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                                r C+ + +k+++++C  ++ +lC+ C ++ H+       H++v
  Cotton_A_27017_BGI-A2_v1.0 11 RACDSCIKKRARWYCAADDAFLCQACDSSVHSAnplarrHKRV 53
                                78*****************************668888889887 PP
2CCT68.12.4e-23361404144
                         CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                                 Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk+a
  Cotton_A_27017_BGI-A2_v1.0 361 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRA 404
                                 9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003364.4E-11855IPR000315B-box-type zinc finger
PROSITE profilePS5011910.808855IPR000315B-box-type zinc finger
PfamPF006431.1E-71153IPR000315B-box-type zinc finger
CDDcd000212.80E-111155No hitNo description
PfamPF062036.9E-18361403IPR010402CCT domain
PROSITE profilePS5101716.083361403IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0016020Cellular Componentmembrane
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 417 aa     Download sequence    Send to blast
MANAVGAKTV RACDSCIKKR ARWYCAADDA FLCQACDSSV HSANPLARRH KRVRLKTASV  60
KSSGDELPLE SFSPTWDRGF TRKARTRRPV KGSIHRKLLK AKNNPVPVVP EVGIDELFNE  120
ENEEEQLLYR VPIFDPFVAE LCTSTTSTEA AVSAVGNEAE TTATESKAFL GQDVDGSHGL  180
FPSEMDLAEF AADVESLLGK GLENESFTMV ELGLTGSKDK DLREYSYGNG QVKIEDEESF  240
EGGMGREPFE LSFNYDTPPS CGGVDELVKE EVAMKSKEDG ECQENTAKKK KRKTLLSLDY  300
EAVITAWATQ GSSWTSGGKP DLDPDECWPD CMRNGGTEVQ QSYSGLIGMG GQQQAMGDGG  360
REARVSRYRE KRRTRLFSKK IRYEVRKLNA EKRPRMKGRF VKRASFLAGP AFPLLNK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1287292KKKKRK
2371387RRTRLFSKKIRYEVRKL
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ6183350.0JQ618335.1 Gossypium hirsutum constans-like protein 5 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017629159.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 16
SwissprotQ8RWD01e-104COL16_ARATH; Zinc finger protein CONSTANS-LIKE 16
TrEMBLA0A1U8LA590.0A0A1U8LA59_GOSHI; zinc finger protein CONSTANS-LIKE 16-like isoform X1
TrEMBLA0A2P5Y4S30.0A0A2P5Y4S3_GOSBA; Uncharacterized protein
STRINGGorai.002G218400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM24672767
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25440.12e-98B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]