PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_27052_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 210aa    MW: 23946.2 Da    PI: 10.1541
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_27052_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B339.78.8e-13499195
                                EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEE.TTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT- CS
                          B3  1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltled.esgrsWevkliyrkksgr..yvltkGWkeFvkangLkegD 78
                                f k+ltp d lk+  +++p + ++++    g     +  ++l    +  +W + ++ rkk++    v+++GW++Fv  ngL++gD
  Cotton_A_27052_BGI-A2_v1.0  4 FSKKLTPTDCLKR--FSIPSRVFTSFpqfhG-----GHAVKLLVrYEAMEWPLVCTTRKKGRYkkPVISRGWRRFVLGNGLNVGD 81
                                7899999999987..7*******99965433.....3345555525669******87665555779******************* PP

                                EEEEEE-SS.SEE..EEE CS
                          B3 79 fvvFkldgr.sefelvvk 95
                                 ++F+ +++ ++ +l+++
  Cotton_A_27052_BGI-A2_v1.0 82 HLTFHKEEDdNSSSLHFR 99
                                *****7766566666665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd100172.65E-153100No hitNo description
SuperFamilySSF1019361.94E-12391IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.107.5E-14397IPR015300DNA-binding pseudobarrel domain
PfamPF023622.0E-9498IPR003340B3 DNA binding domain
SMARTSM010191.1E-74101IPR003340B3 DNA binding domain
PROSITE profilePS508639.37539104IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MELFSKKLTP TDCLKRFSIP SRVFTSFPQF HGGHAVKLLV RYEAMEWPLV CTTRKKGRYK  60
KPVISRGWRR FVLGNGLNVG DHLTFHKEED DNSSSLHFRV ELKKAINPST TTTPCKSKSK  120
YSKEGERQVL NKQFGAIVTI DHHKGDHKYF KHFGLSDGGN GRLIDSNDQA SLRSDCDKEK  180
RAAIVPEHLN LSQSIYESHV NLNLSLGNQY
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2P5X5U31e-153A0A2P5X5U3_GOSBA; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM3579422