PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_27056_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 131aa    MW: 15183.7 Da    PI: 10.374
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_27056_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B347.14.3e-1515981390
                                TT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTE...EEE-TTHHHHHHHHT--TT-EEEEEE-SS.SE CS
                          B3 13 sgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgr...yvltkGWkeFvkangLkegDfvvFkldgr.se 89
                                ++r+++p k + ++    +g+ e  ++  ++de gr+W++++  rk+s++    vltkGW+eFv  ++L   D v F++d++  +
  Cotton_A_27056_BGI-A2_v1.0 15 EKRMTIPSKSL-NCfpalSGS-EHMVDFDVRDECGRVWKFRIYTRKSSNKyrkPVLTKGWREFVCRKELSIDDKVAFYMDKQqAD 97
                                3579******9.455998444.46689***************667777776779************************8865444 PP

                                E CS
                          B3 90 f 90
                                +
  Cotton_A_27056_BGI-A2_v1.0 98 G 98
                                4 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.3E-16495IPR015300DNA-binding pseudobarrel domain
CDDcd100173.11E-14493No hitNo description
SMARTSM010190.00224110IPR003340B3 DNA binding domain
SuperFamilySSF1019361.26E-13593IPR015300DNA-binding pseudobarrel domain
PfamPF023626.2E-121697IPR003340B3 DNA binding domain
PROSITE profilePS508639.33342110IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 131 aa     Download sequence    Send to blast
MATIVKKRLR KTDIEKRMTI PSKSLNCFPA LSGSEHMVDF DVRDECGRVW KFRIYTRKSS  60
NKYRKPVLTK GWREFVCRKE LSIDDKVAFY MDKQQADGSV EYRVTVQKAV KVFGAVFAHK  120
PFPGEASNDI V
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012467821.16e-89PREDICTED: B3 domain-containing transcription factor NGA4-like
TrEMBLA0A2P5VYY21e-92A0A2P5VYY2_GOSBA; Uncharacterized protein
STRINGGorai.002G215500.12e-88(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16920512
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01500.11e-10B3 family protein