PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_27285_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRAS
Protein Properties Length: 128aa    MW: 14416.6 Da    PI: 9.7728
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_27285_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS104.21.9e-321128246372
                        GRAS 246 adhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvp 328
                                 +++n ++F+  + ea  yy alfds+e+++pre++er++vE+  l r+  n v+ceg+er++r++ ++kWr+r+++aGF+  p
  Cotton_A_27285_BGI-A2_v1.0   1 MNTNMTPFVLWVGEASAYYGALFDSIESSVPREKSERVMVEEG-LCRKTANSVSCEGRERVKRCKIFGKWRARMTMAGFELKP 82 
                                 588999*************************************.9999*********************************** PP

                        GRAS 329 lsekaakqaklllrkvk.sdg.yrveeesgslvlgWkdrpLvsvSa 372
                                 lse++a+++++ l+  + ++  ++++ee+g +++gW++r+L+++Sa
  Cotton_A_27285_BGI-A2_v1.0  83 LSESVAESMRTRLNSGNrVNLrFTMKEENGGICFGWMGRTLTVASA 128
                                 *************998865445**********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF035146.5E-301128IPR005202Transcription factor GRAS
PROSITE profilePS5098513.751108IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 128 aa     Download sequence    Send to blast
MNTNMTPFVL WVGEASAYYG ALFDSIESSV PREKSERVMV EEGLCRKTAN SVSCEGRERV  60
KRCKIFGKWR ARMTMAGFEL KPLSESVAES MRTRLNSGNR VNLRFTMKEE NGGICFGWMG  120
RTLTVASA
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012486504.14e-75PREDICTED: scarecrow-like protein 8
SwissprotQ9FYR71e-49SCL8_ARATH; Scarecrow-like protein 8
TrEMBLA0A0D2QDD09e-74A0A0D2QDD0_GOSRA; Uncharacterized protein
STRINGGorai.006G198300.12e-74(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52510.14e-52SCARECROW-like 8