PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_27343_BGI-A2_v1.0
Common NameF383_18518
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 195aa    MW: 22459 Da    PI: 4.7295
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_27343_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM121.95.8e-3891291128
                         NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyW 83 
                                 lppGfrF Ptdeelvv++L++k++  +++  +vi+++d+y ++Pw+L+ k+ +e ++wy++s+r         +nr t++gyW
  Cotton_A_27343_BGI-A2_v1.0   9 LPPGFRFYPTDEELVVHFLQRKAALLPCHP-DVIPDLDLYPYDPWELDGKALGEGNQWYYYSRRT--------QNRNTSKGYW 82 
                                 79*************************999.99**************977778899******984........58999***** PP

                         NAM  84 katgkdkevlsk.kgelvglkktLvfykg.rapkgektdWvmheyrl 128
                                 k  g d++v+++ ++++vg+kk +vfy g + p g kt+W+m+eyrl
  Cotton_A_27343_BGI-A2_v1.0  83 KPMGIDEPVVNSnSSKKVGMKKYFVFYIGeSGPAGIKTNWIMQEYRL 129
                                 *********99867888**********875889************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-477162IPR003441NAC domain
PROSITE profilePS5100547.0359163IPR003441NAC domain
PfamPF023653.1E-2310129IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010089Biological Processxylem development
GO:0043067Biological Processregulation of programmed cell death
GO:0048367Biological Processshoot system development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MGDNRNVNLP PGFRFYPTDE ELVVHFLQRK AALLPCHPDV IPDLDLYPYD PWELDGKALG  60
EGNQWYYYSR RTQNRNTSKG YWKPMGIDEP VVNSNSSKKV GMKKYFVFYI GESGPAGIKT  120
NWIMQEYRLS DSDSSSSSRS SKRRGGHSKI DYSKWVVCRV YERNCSEEED DGTELSCLDE  180
VFLSLDDLDE ISLPD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A2e-41616917174NAC domain-containing protein 19
3swm_B2e-41616917174NAC domain-containing protein 19
3swm_C2e-41616917174NAC domain-containing protein 19
3swm_D2e-41616917174NAC domain-containing protein 19
3swp_A2e-41616917174NAC domain-containing protein 19
3swp_B2e-41616917174NAC domain-containing protein 19
3swp_C2e-41616917174NAC domain-containing protein 19
3swp_D2e-41616917174NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269|PubMed:18069942, ECO:0000269|PubMed:20458494}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ8018180.0KJ801818.1 Gossypium hirsutum NAC transcription factor (XND1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017633129.11e-144PREDICTED: NAC domain-containing protein 104-like
SwissprotQ8GWK64e-91NC104_ARATH; NAC domain-containing protein 104
TrEMBLA0A0B0MJ141e-142A0A0B0MJ14_GOSAR; NAC domain-containing 68
STRINGGorai.005G217400.11e-143(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36742862
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64530.14e-90xylem NAC domain 1
Publications ? help Back to Top
  1. Zhao C, et al.
    XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED.
    New Phytol., 2017. 216(1): p. 76-89
    [PMID:28742236]
  2. Tang N, et al.
    Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis.
    Nat Commun, 2018. 9(1): p. 3884
    [PMID:30250259]