PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_27458_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 243aa    MW: 26047.7 Da    PI: 4.9272
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_27458_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.90.00034104125223
                                 EETTTTEEESSHHHHHHHHHHT CS
                     zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                                 +C  C+k F+++     H+++H
  Cotton_A_27458_BGI-A2_v1.0 104 TCYVCSKNFTSWKAVFGHLKSH 125
                                 6*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.764103130IPR007087Zinc finger, C2H2
PROSITE patternPS000280105125IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048235Biological Processpollen sperm cell differentiation
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MTTPTESPKD KPSSKQMICE NESSTTEKND EGDNVGGGVE SVDGQNMSID DANETGIDDP  60
KGQGSSSRKR GSTTDVAIQI GSGSGSGSNA RKKREMEIPR GEPTCYVCSK NFTSWKAVFG  120
HLKSHQRETP GALPPPTFTP TEGSPETNND DETNPREQLA PTLLNLALET MQKMSEDSNM  180
SVVVAGEEAS SSGKGRGRGK GRGRGRGRRG LDIDLNQPKT NIEYSDYLLE LVCVCSKLNV  240
LFG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1197206RGKGRGRGRG
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012487225.11e-137PREDICTED: uncharacterized protein LOC105800568
TrEMBLA0A1U8P8L31e-133A0A1U8P8L3_GOSHI; transcription regulatory protein SNF2-like
STRINGGorai.001G198600.11e-104(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58752241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35700.11e-13C2H2 family protein