PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_27518_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family WRKY
Protein Properties Length: 1175aa    MW: 132096 Da    PI: 6.2214
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_27518_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY83.42.2e-26539597159
                                 ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                        WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                                 ldDgy+W K GqK+vkg+++prsYYrC s+ C +kk ver+ +d++++++tY+g Hnh+
  Cotton_A_27518_BGI-A2_v1.0 539 LDDGYRWGKLGQKMVKGNPYPRSYYRCLSTCCLAKKYVERDPQDTSFFVTTYHGLHNHD 597
                                 59********************************************************7 PP
2WRKY77.91.1e-24733793259
                                 --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                                 dDg++WrKYGqK++ g+++prs++rCt++   gC ++k v+r ++dp+v+eitY  +H+++
  Cotton_A_27518_BGI-A2_v1.0 733 DDGFCWRKYGQKDILGAKYPRSFFRCTYRhiqGCLATKIVQRLDDDPTVFEITYCRKHTCN 793
                                 8***************************99999**************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF520581.87E-9396IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:3.80.10.101.9E-53289IPR032675Leucine-rich repeat domain, L domain-like
SuperFamilySSF520581.87E-9164354IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:3.80.10.101.9E-5208349IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:2.20.25.801.3E-24532597IPR003657WRKY domain
PROSITE profilePS5081127.003534599IPR003657WRKY domain
SuperFamilySSF1182901.14E-22535597IPR003657WRKY domain
SMARTSM007744.3E-28539598IPR003657WRKY domain
PfamPF031062.1E-20540597IPR003657WRKY domain
Gene3DG3DSA:2.20.25.805.9E-23730793IPR003657WRKY domain
SuperFamilySSF1182901.57E-22731794IPR003657WRKY domain
SMARTSM007744.4E-35732794IPR003657WRKY domain
PfamPF031063.4E-22733792IPR003657WRKY domain
PROSITE profilePS5081119.393733795IPR003657WRKY domain
PfamPF078874.8E-509111052IPR012416CALMODULIN-BINDING PROTEIN60
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006950Biological Processresponse to stress
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1175 aa     Download sequence    Send to blast
MDLPRETGKL LKLRQLKVSF YHLCGKKKLK SNILIHPQTI SNLSQLAELS IDVNPADKRW  60
DDSVEAVLKE VCSSKTLRTL SLYLPTFQLL DDASLIYPSL SRFRFTVGHH KRRIISRVPH  120
EVEAEFRKWD KCLRFVNGEN IPIQIKAVLK YSNSFFLDHH TTAMNLSEFG IENMKGLKFC  180
LLAECNKMES LIDGEMHYGR NEDDQSESDP GSVQHMLESL EYLSIYYMED LQCIWRGADS  240
FGCMSKLKFL ALHACPQLSK IFSLTLLENF INLEEIILED CPRVISLVSH ASVKPIMSDK  300
IFLPSLKRLL LLYLPELVSI SNGLLIAPKL ESIGCYNCPK LKSVSKMELS SKTLKIIKGE  360
CEWWEGMDWN ETEWRDGPGY LMHIFSPIDN QKDVMTQMVE GRDPHEATIQ NEDQQLGDQK  420
PLEVSTQDHR GKCLDYTEER MMGTDVKEPP SGCVFPSNPL CMTSHAPEQA RSFTSGNNKS  480
LEDDECFLVP NIVEVDVDED EPKAKRWNCT ENENMGVIGS ASNTTQGNRA ANQIRSKVLD  540
DGYRWGKLGQ KMVKGNPYPR SYYRCLSTCC LAKKYVERDP QDTSFFVTTY HGLHNHDEWN  600
SRGLSKLHSQ PCIDHRANNV KDAAEAAKSI CPTKEYGDVF QASIQNEGAH PGIPEASIQD  660
ESQQSVGVDP QPSALEIIVS ESTESTPLPL TGSPLSGDFD RYFKEQYQLH LDASKKSETR  720
QVGVRPGTDL APDDGFCWRK YGQKDILGAK YPRSFFRCTY RHIQGCLATK IVQRLDDDPT  780
VFEITYCRKH TCNLASNVMP PTAPSRNQEH GTRIEPQQQH SQLPEENQKQ QSQDLLVLPS  840
TPGQCVEQSL NHKSNSGNDQ KTISQEDNNS TIVCQASSPS PSDSSTMIPQ LSAAALSIAQ  900
LQARGFEEPA KQNQLYKKHY PPMLGDEVWR LDRIGKNGII HVRLASEGIN TVQDFLRMSV  960
VSPGELRRIL GPRMSERMWD NAIKHARTCV MGNKYYVFRG SNYRILLNPI CQLMGAEING  1020
SIYPTHTLSN IDTVYLEKLV RQAYVNWSSL EEREGISNEI IALLTQDIMA QRTGANVMNT  1080
IPSNLPAMPP PGPWLAELPD HPVLMDNSNV LSSPTTGECA VQSLNQKNNS GNDRQTISQE  1140
DNNSTIVCHA PPPSHSNSSA IISELSATTL PIVCA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-205385971675Probable WRKY transcription factor 4
2lex_A4e-205385971675Probable WRKY transcription factor 4
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2431140.0AC243114.1 Gossypium raimondii clone GR__Ba0041F12-jfm, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017643220.10.0PREDICTED: uncharacterized protein LOC108484090 isoform X1
TrEMBLA0A1U8NRM50.0A0A1U8NRM5_GOSHI; uncharacterized protein LOC107951200 isoform X5
STRINGGorai.008G200800.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1975946
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24110.12e-28WRKY DNA-binding protein 30