PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_27582_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

ZF-HD

Protein Properties

Length: 257aa MW: 27796.9 Da PI: 7.6203

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_27582_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	103.7	1.2e-32	56	111	3	59
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 ++rY+eC+kNhA+s+Ggha+DGCgEfm++ g+egt +alkCaAC+CHRnFHR+e++ Cotton_A_27582_BGI-A2_v1.0 56 GIRYRECQKNHAVSIGGHALDGCGEFMAA-GDEGTLDALKCAACNCHRNFHRKETDG 111 689***********************9.999*******************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD125774	4.0E-22	55	110	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Pfam	PF04770	6.4E-30	57	109	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	1.4E-29	58	108	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	27.313	59	108	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamily	SSF46689	3.06E-21	181	255	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	7.4E-32	183	256	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	6.8E-28	194	251	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 257 aa Download sequence Send to blast
MDFEEHDCQD EEMGMAVPAG YDSLCNSSAP RSKLGPAASG GEGAAASAPP RKVGSGIRYR 60 ECQKNHAVSI GGHALDGCGE FMAAGDEGTL DALKCAACNC HRNFHRKETD GEGSSIYNPH 120 HHHHHYQQQQ HPQFSPYYRA PPPAGFLHLT PQQRPLALPA ASGGGIAGGY SREDEDVSNP 180 SSSGGGGGGS GGLKKRFRTK FTPEQKDKML GFAERLGWRI QKHDEAAVEQ FCEETGVKRQ 240 VLKVWMHNNK YTLGKKP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh7_A	7e-30	195	250	18	73	ZF-HD homeobox family protein
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Functional Description ? help Back to Top
Source	Description
UniProt	Essential protein. Putative transcription factor.
UniProt	Putative transcription factor. {ECO:0000250}.
UniProt	Putative transcription factor. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017603607.1	0.0	PREDICTED: zinc-finger homeodomain protein 2-like
Refseq	XP_017603608.1	0.0	PREDICTED: zinc-finger homeodomain protein 2-like
Swissprot	A2Z259	6e-76	ZHD1_ORYSI; Zinc-finger homeodomain protein 1
Swissprot	Q6YXH5	6e-76	ZHD1_ORYSJ; Zinc-finger homeodomain protein 1
Swissprot	Q9SB61	1e-76	ZHD2_ARATH; Zinc-finger homeodomain protein 2
TrEMBL	A0A2P5Y7R0	1e-168	A0A2P5Y7R0_GOSBA; Uncharacterized protein
STRING	Gorai.009G231800.1	1e-141	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4505	24	54

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24660.1	1e-72	homeobox protein 22

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Bueso E,Serrano R,Pallás V,Sánchez-Navarro JA Seed tolerance to deterioration in arabidopsis is affected by virus infection. Plant Physiol. Biochem., 2017. 116: p. 1-8 [PMID:28477474]