PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_27634_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB_related
Protein Properties Length: 183aa    MW: 21056.9 Da    PI: 9.7427
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_27634_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.21.4e-163680147
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
             Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                                rg  T++E+ ++v++++++G++ W+tIa++++ gRt++++k++w+++
  Cotton_A_27634_BGI-A2_v1.0 36 RGHITPQEEGIIVELHALWGNK-WSTIAKYLP-GRTDNEIKNYWRTH 80
                                6778******************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.972130IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.606.5E-101642IPR009057Homeodomain-like
SuperFamilySSF466891.65E-201683IPR009057Homeodomain-like
PROSITE profilePS5129423.543185IPR017930Myb domain
SMARTSM007171.9E-133583IPR001005SANT/Myb domain
PfamPF002491.3E-143680IPR001005SANT/Myb domain
CDDcd001674.07E-104081No hitNo description
Gene3DG3DSA:1.10.10.607.0E-204380IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MMVWGAPKQA WRKGLNRSGK SCRLRWVNYL RPGLKRGHIT PQEEGIIVEL HALWGNKWST  60
IAKYLPGRTD NEIKNYWRTH FMKKERSAQR QQKRKALKLK QQPPQTNKEE TAAVRDGGGA  120
TDHEGGMCEE AATLLDDYLM NEGLWWNQQQ QANNIAMQMQ QVACNCYGGD VISNEYNGVG  180
YIF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-17178440107B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Isoform MYB59-1 is induced by jasmonate (JA), salicylic acid (SA), gibberellic acid (GA), and ethylene. Also induced by cadmium (Cd). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:16531467}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5908286e-68JX590828.1 Gossypium hirsutum clone NBRI_GE25823 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017636696.11e-128PREDICTED: transcription factor MYB59-like
SwissprotQ4JL844e-37MYB59_ARATH; Transcription factor MYB59
TrEMBLA0A2P5YQ231e-127A0A2P5YQ23_GOSBA; Uncharacterized protein
STRINGGorai.001G090100.11e-113(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G30210.11e-44myb domain protein 121
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Nishida S,Kakei Y,Shimada Y,Fujiwara T
    Genome-wide analysis of specific alterations in transcript structure and accumulation caused by nutrient deficiencies in Arabidopsis thaliana.
    Plant J., 2017. 91(4): p. 741-753
    [PMID:28586097]
  4. Hickman R, et al.
    Architecture and Dynamics of the Jasmonic Acid Gene Regulatory Network.
    Plant Cell, 2017. 29(9): p. 2086-2105
    [PMID:28827376]