PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_27916_BGI-A2_v1.0

Common Name

F383_11077

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

MYB_related

Protein Properties

Length: 1150aa MW: 128191 Da PI: 9.4665

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_27916_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	30	1.2e-09	45	85	3	45
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 +W++ E e++++a +++G++ Wk++a+ + +R+ +++ ++ Cotton_A_27916_BGI-A2_v1.0 45 PWSKAEIERFYKAYREYGKD-WKKVAAAVR-NRSTEMVEAFYI 85 8***************99.*****.**99988775 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.05E-10	40	89	IPR009057	Homeodomain-like
PROSITE profile	PS51293	11.597	41	94	IPR017884	SANT domain
SMART	SM00717	1.6E-7	42	90	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	6.2E-6	44	84	IPR009057	Homeodomain-like
Pfam	PF00249	1.8E-8	45	86	IPR001005	SANT/Myb domain
CDD	cd00167	8.07E-7	45	84	No hit	No description
SMART	SM01135	5.4E-55	653	754	IPR033471	DIRP domain
Pfam	PF06584	2.2E-31	653	753	IPR033471	DIRP domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1150 aa Download sequence Send to blast
MAPTRKYKTV NKQYSSKCEV SPDKDAGNSR KSNPKKKLFD KLGSPWSKAE IERFYKAYRE 60 YGKDWKKVAA AVRNRSTEMV EAFYIMNRAY LSLPDGVASV IGLIAMMTDH YSVLGGSDAE 120 IESNEPSEIP RKTQKRKRVK AYFGSSKEDV FLPQSIASTQ GCLSLLKRIG FNGINPHAVG 180 RRTPRVPVSY SYRRDDMENY NPPKKRVKKS EANDNDDEHV AAVTLTGALQ RGSCPQFSQR 240 PYKKAECRRS TPVQSYDRML LQSETTKAKL PSSSSKHWME SRHGVKEPVI GTYIKDTGPT 300 EDMEGAGTVE VRGKGKKVYR KKVKAVEFIN NLSDDVGEAC SGIEEGIIDR AVKGKVEMEI 360 SGAKCKLSPW SQRKKSKKIV SGDESASLDA LLALANLSTS ISPASIVESE VSAKFKEDRI 420 ARETDEKPSA SEAASTSHRR DETKHIGPKE KVLNLITGAE DGTSRKSKVG RYSAKDDNVV 480 SEPKQQAEST NNSKKSKSKS LSTSQLQISN PEARIDSPFI QSFDNEDMAE EVNKSLTKGS 540 SAQSSVQSRQ RKSFRVPEDS LTKNDPKFAE TDSLVSTLQV PAESKLVSLP NKHQSRRKMN 600 LKRALLSTDI NSLNYTLANQ PNKDSLSQDG LKERLSFCLS SNLARRWCSF EWFYSAIEYA 660 WFVKKEFVEY LNHVGLGHIP RLTRVEWGVI RSSLGKPRRF SERFLHEERE KLKQYRESVR 720 QHYAQLRIGT TEGLPMDLPQ PLSIGQRVSA IHPETREVND GKVLGLEHDS FKVQFDCPEL 780 GVELVTDIDC MPLYPLENFP ETLRSQNLAF DKFPVTPNES QVNGHSDFRG SGVYAPSGHL 840 ENATGSVNML ANRIKEDASH NILNAKTSVP SVFAAHQTAN GLPLTVAHIQ GREADIQVMS 900 ELNRALDKKE AILMELRNTN DDILDNKSGG SCLKGSERFK RHIATVSSAL HNLRQHNAYP 960 ANPVSPQQKP PTKSNFLGSL TSSIDSSLVS QESDSVAGEI VEGSRLKAGS MVDAAIKAMS 1020 STKEDEDAFM RIVEVLDSID KPQFTPDIRM PVIKSAEPEN GSISYQKHLV SRLPQNNEQV 1080 PSELITSCVA TLLMIQTCTE RRFPPADVAQ IMDLAARSLH PWCSENLRIY REIQRCMGKI 1140 KTQILALIPT

Sequence ? help Back to Top

Protein Sequence Length: 1150 aa Download sequence Send to blast

MAPTRKYKTV NKQYSSKCEV SPDKDAGNSR KSNPKKKLFD KLGSPWSKAE IERFYKAYRE  60
YGKDWKKVAA AVRNRSTEMV EAFYIMNRAY LSLPDGVASV IGLIAMMTDH YSVLGGSDAE  120
IESNEPSEIP RKTQKRKRVK AYFGSSKEDV FLPQSIASTQ GCLSLLKRIG FNGINPHAVG  180
RRTPRVPVSY SYRRDDMENY NPPKKRVKKS EANDNDDEHV AAVTLTGALQ RGSCPQFSQR  240
PYKKAECRRS TPVQSYDRML LQSETTKAKL PSSSSKHWME SRHGVKEPVI GTYIKDTGPT  300
EDMEGAGTVE VRGKGKKVYR KKVKAVEFIN NLSDDVGEAC SGIEEGIIDR AVKGKVEMEI  360
SGAKCKLSPW SQRKKSKKIV SGDESASLDA LLALANLSTS ISPASIVESE VSAKFKEDRI  420
ARETDEKPSA SEAASTSHRR DETKHIGPKE KVLNLITGAE DGTSRKSKVG RYSAKDDNVV  480
SEPKQQAEST NNSKKSKSKS LSTSQLQISN PEARIDSPFI QSFDNEDMAE EVNKSLTKGS  540
SAQSSVQSRQ RKSFRVPEDS LTKNDPKFAE TDSLVSTLQV PAESKLVSLP NKHQSRRKMN  600
LKRALLSTDI NSLNYTLANQ PNKDSLSQDG LKERLSFCLS SNLARRWCSF EWFYSAIEYA  660
WFVKKEFVEY LNHVGLGHIP RLTRVEWGVI RSSLGKPRRF SERFLHEERE KLKQYRESVR  720
QHYAQLRIGT TEGLPMDLPQ PLSIGQRVSA IHPETREVND GKVLGLEHDS FKVQFDCPEL  780
GVELVTDIDC MPLYPLENFP ETLRSQNLAF DKFPVTPNES QVNGHSDFRG SGVYAPSGHL  840
ENATGSVNML ANRIKEDASH NILNAKTSVP SVFAAHQTAN GLPLTVAHIQ GREADIQVMS  900
ELNRALDKKE AILMELRNTN DDILDNKSGG SCLKGSERFK RHIATVSSAL HNLRQHNAYP  960
ANPVSPQQKP PTKSNFLGSL TSSIDSSLVS QESDSVAGEI VEGSRLKAGS MVDAAIKAMS  1020
STKEDEDAFM RIVEVLDSID KPQFTPDIRM PVIKSAEPEN GSISYQKHLV SRLPQNNEQV  1080
PSELITSCVA TLLMIQTCTE RRFPPADVAQ IMDLAARSLH PWCSENLRIY REIQRCMGKI  1140
KTQILALIPT

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX576973	1e-139	JX576973.1 Gossypium hirsutum clone NBRI_GE8704 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017616887.1	0.0	PREDICTED: protein ALWAYS EARLY 2-like isoform X2
TrEMBL	A0A0B0PVP3	0.0	A0A0B0PVP3_GOSAR; Protein ALWAYS EARLY 2-like protein
STRING	Gorai.013G124600.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2962	22	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21430.2	1e-142	DNA binding