PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_28021_BGI-A2_v1.0
Common NameF383_08801
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C3H
Protein Properties Length: 355aa    MW: 40104.6 Da    PI: 7.4791
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_28021_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.54.1e-0792116126
                                 --S---SGGGGTS--TTTTT-SS-SS CS
                     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                                 +kt+ C  f+  GtC+ G+ C+FaHg
  Cotton_A_28021_BGI-A2_v1.0  92 FKTRMCAKFRL-GTCRNGEGCNFAHG 116
                                 69*********.*************8 PP
2zf-CCCH28.42.9e-09153175325
                                 S---SGGGGTS--TTTTT-SS-S CS
                     zf-CCCH   3 telCrffartGtCkyGdrCkFaH 25 
                                 ++lC+ ++ + +C+yGdrC+F H
  Cotton_A_28021_BGI-A2_v1.0 153 MKLCKKYYNGEECPYGDRCNFLH 175
                                 689******66************ PP
3zf-CCCH34.14.6e-11238264127
                                 --S---SGGGGTS--TTTTT-SS-SSS CS
                     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                                 +kt+lC  +  t +C++G++C+FaHg+
  Cotton_A_28021_BGI-A2_v1.0 238 WKTKLCTKWETTDHCPFGEKCHFAHGQ 264
                                 8************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.102.4E-1487124IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.72E-889122IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.2291118IPR000571Zinc finger, CCCH-type
SMARTSM003560.06791117IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.27E-7150177IPR000571Zinc finger, CCCH-type
SMARTSM003560.0015150177IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.023150178IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.5E-9153176IPR000571Zinc finger, CCCH-type
PfamPF006429.6E-7153175IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-15235268IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.71E-10236268IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.202237265IPR000571Zinc finger, CCCH-type
SMARTSM003564.1E-4237264IPR000571Zinc finger, CCCH-type
PfamPF006423.4E-8238264IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MNYPESRSSF MRTPQSTYAG SDAIGIWPEF PMNDWQFDPH SEFEQQQQQQ SPPFKRPRHS  60
EDNQSNIVQC TPTNPRMPSN PPTNKGTTNI FFKTRMCAKF RLGTCRNGEG CNFAHGIEDL  120
RQPPPNWQEL VGGREEERPS GNWDDDQKII HRMKLCKKYY NGEECPYGDR CNFLHEDPSK  180
FRDDMGRFRE SSAISIGTTA PPAGHGTASE QSEGNRPLNS SSSDPFRGNT KPVYPVYWKT  240
KLCTKWETTD HCPFGEKCHF AHGQAELQGM NGRVDGDYGS TGSGLTRIGS VSTKIHNLPA  300
NDPPPVTSSA PSLDEKAQAK KCLFKWKGPR KINRIYGDWL DDMPLVHNLP SQVES
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ5277611e-136HQ527761.1 Gossypium herbaceum clone NBRI_C_EYT27PB01BXVU7 simple sequence repeat marker, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017611520.10.0PREDICTED: zinc finger CCCH domain-containing protein 39
RefseqXP_017611600.10.0PREDICTED: zinc finger CCCH domain-containing protein 39
SwissprotQ9LT811e-102C3H39_ARATH; Zinc finger CCCH domain-containing protein 39
TrEMBLA0A0B0PQL60.0A0A0B0PQL6_GOSAR; Uncharacterized protein
STRINGGorai.001G040700.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM100662536
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.11e-104C3H family protein