PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_28089_BGI-A2_v1.0
Common NameF383_23990
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 221aa    MW: 25148.3 Da    PI: 8.7457
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_28089_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.36.4e-171360148
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
             Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                +g+W+++Ede+l+++++ +G g+W+t ++  g+ R++k+c++rw +yl
  Cotton_A_28089_BGI-A2_v1.0 13 KGAWSKQEDEKLINYIRIHGEGCWRTLPQAAGLLRCGKSCRLRWINYL 60
                                79******************************99************97 PP
2Myb_DNA-binding57.82.5e-1866111148
                                 TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
             Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                 rg++T++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++l
  Cotton_A_28089_BGI-A2_v1.0  66 RGNFTEDEEDLIIKLHALLGNR-WSLIAGRLP-GRTDNEVKNYWNSHL 111
                                 89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.2E-23463IPR009057Homeodomain-like
PROSITE profilePS5129416.308860IPR017930Myb domain
SuperFamilySSF466891.24E-2811107IPR009057Homeodomain-like
SMARTSM007174.6E-131262IPR001005SANT/Myb domain
PfamPF002498.5E-151360IPR001005SANT/Myb domain
CDDcd001672.27E-101560No hitNo description
PROSITE profilePS5129428.19161115IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.6E-2764116IPR009057Homeodomain-like
SMARTSM007171.6E-1765113IPR001005SANT/Myb domain
PfamPF002496.9E-1766111IPR001005SANT/Myb domain
CDDcd001678.40E-1368111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MRKPCCDKQD TNKGAWSKQE DEKLINYIRI HGEGCWRTLP QAAGLLRCGK SCRLRWINYL  60
RPDLKRGNFT EDEEDLIIKL HALLGNRWSL IAGRLPGRTD NEVKNYWNSH LRRKLINMGI  120
DPNNHRLITH NHLPRPHDSN SGASIISPAS KVPVTDNTNI HPPEKSRGDN DQVSDAASSL  180
EDHKLPDLNL DLTISVSAST VDKVEDDRRK SQKQSKIIED P
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-28101154108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor involved in regulation of protection against UV. Mediates transcriptional repression of CYP73A5, the gene encoding trans-cinnamate 4-monooxygenase, thereby regulating the accumulation of the UV-protectant compound sinapoylmalate. {ECO:0000269|PubMed:11080161}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by exposure to UV-B light. {ECO:0000269|PubMed:11080161}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017632362.11e-162PREDICTED: transcription repressor MYB4-like
SwissprotQ9SZP16e-81MYB4_ARATH; Transcription repressor MYB4
TrEMBLA0A0B0P5X71e-161A0A0B0P5X7_GOSAR; Transcription repressor MYB4-like protein
TrEMBLA0A2P5XU681e-161A0A2P5XU68_GOSBA; Uncharacterized protein
STRINGGorai.005G162600.11e-147(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38620.13e-83myb domain protein 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Schenke D,Cai D,Scheel D
    Suppression of UV-B stress responses by flg22 is regulated at the chromatin level via histone modification.
    Plant Cell Environ., 2014. 37(7): p. 1716-21
    [PMID:24450952]
  3. Zhou M, et al.
    Changing a conserved amino acid in R2R3-MYB transcription repressors results in cytoplasmic accumulation and abolishes their repressive activity in Arabidopsis.
    Plant J., 2015. 84(2): p. 395-403
    [PMID:26332741]
  4. Zhang J, et al.
    Soybean SPX1 is an important component of the response to phosphate deficiency for phosphorus homeostasis.
    Plant Sci., 2016. 248: p. 82-91
    [PMID:27181950]
  5. Zhou M, et al.
    LNK1 and LNK2 Corepressors Interact with the MYB3 Transcription Factor in Phenylpropanoid Biosynthesis.
    Plant Physiol., 2017. 174(3): p. 1348-1358
    [PMID:28483877]
  6. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]
  7. Verma N,Burma PK
    Regulation of tapetum-specific A9 promoter by transcription factors AtMYB80, AtMYB1 and AtMYB4 in Arabidopsis thaliana and Nicotiana tabacum.
    Plant J., 2017. 92(3): p. 481-494
    [PMID:28849604]