PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_28157_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

NZZ/SPL

Protein Properties

Length: 325aa MW: 35150.6 Da PI: 8.646

Description

NZZ/SPL family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_28157_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NOZZLE	58.1	2.7e-18	31	323	39	314
NOZZLE 39 tkksrgrkpgsktaqqkqkkptlrgmgvaklerfiieeekkkl.vvatvgdtssvaaisntatrlpvpvdrgvvlqgfps... 117 k +grkp k qk k rgmgva+ler + e + ++ g + a+ + pv +gv g ps Cotton_A_28157_BGI-A2_v1.0 31 VKSNKGRKPSGKGPYQK--KQPQRGMGVAQLERLRKMSETRTPtTINQFGCEA------MGASNV--PVLHGVANYGVPSmmi 103 45669***9988764..4457*******9888877652333334333......344444..5899*****999 PP NOZZLE 118 ..........................slgs..srilcggvgsgqvmidpvispwgfvetsatthelssisnpqmynassnnrc 172 +g+ s++l+g g qv ++ ve+s elss+++ q + ++ c Cotton_A_28157_BGI-A2_v1.0 104 nggsgglwgwgadtdglmmqrvvgngGFGGfnSQVLVGNPGNVQV----SCAAASVVEASK---ELSSMPKFQH--CKPEH-C 176 999999999988888544444443333333334444444444433....356666777776...99987654..44555.* PP NOZZLE 173 dtcfkkkrldgdqnnvvrsngggfskytmi.pppmngydeyllqsdhhqrsqgfl...ydqriaraasvsaasasinpyfnea 251 d cfkkkr + ++ + ngg f ++ p + + l+++ q ++ + + r ar+a aa+ +n +ne+ Cotton_A_28157_BGI-A2_v1.0 177 DLCFKKKRCNMEN---GKFNGGLFNQFGQTfPNKGTDFHGWNLENN--QNTNEEMmkgFRARAARSAYAYAAAGQMN--INET 252 *******9988...789****9873555555666666655..43333221124678888887777777766..6887 PP NOZZLE 252 tnltgsreefgsvlegnprngsrgvkeyeffpgkydervs.k.......vakvaslvg......dcspntidlslkl 314 + + + gn v eyeffpgk + ++ k + a +vg + +pn +dlslkl Cotton_A_28157_BGI-A2_v1.0 253 VDVVAIHRK------GNSFGTGSYVMEYEFFPGKNGRNTAsKewefpeeASSSAITVGgeasyaNNAPNCVDLSLKL 323 777665544......44445556799*****98754331211111112222223332221114568999999997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF08744	1.8E-19	29	323	IPR014855	Plant transcription factor NOZZLE

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0048653	Biological Process	anther development
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 325 aa Download sequence Send to blast
MATSLTLLTP NTDNPTTKPM EDEAKPAMEF VKSNKGRKPS GKGPYQKKQP QRGMGVAQLE 60 RLRKMSETRT PTTINQFGCE AMGASNVPVL HGVANYGVPS MMINGGSGGL WGWGADTDGL 120 MMQRVVGNGG FGGFNSQVLV GNPGNVQVSC AAASVVEASK ELSSMPKFQH CKPEHCDLCF 180 KKKRCNMENG KFNGGLFNQF GQTFPNKGTD FHGWNLENNQ NTNEEMMKGF RARAARSAYA 240 YAAAGQMNIN ETVDVVAIHR KGNSFGTGSY VMEYEFFPGK NGRNTASKEW EFPEEASSSA 300 ITVGGEASYA NNAPNCVDLS LKLSY

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016733178.1	0.0	PREDICTED: protein SPOROCYTELESS-like isoform X1
TrEMBL	A0A1U8N5Q2	0.0	A0A1U8N5Q2_GOSHI; protein SPOROCYTELESS-like isoform X1
TrEMBL	A0A2P5WHU3	0.0	A0A2P5WHU3_GOSBA; Uncharacterized protein
STRING	Gorai.002G077500.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM18639	6	7

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G27330.1	9e-06	sporocyteless (SPL)