PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_28197_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family WRKY
Protein Properties Length: 497aa    MW: 54714.5 Da    PI: 6.5836
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_28197_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY64.41.8e-20206276259
                                 --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-......S......SSTTEEEEEEES--SS- CS
                        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkvers......a......edpkvveitYegeHnhe 59 
                                  Dg++WrKYGqK  kg+++pr+YYrCt a +Cpv+k+v+ s      +      ed +++++tYeg+Hnh+
  Cotton_A_28197_BGI-A2_v1.0 206 YDGCQWRKYGQKISKGNPCPRAYYRCTVApDCPVRKQVDFSlfyclsShkyfcfEDMSILVTTYEGSHNHP 276
                                 59**************************99********96533322213333338***************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.808.1E-26190278IPR003657WRKY domain
SuperFamilySSF1182902.09E-20197278IPR003657WRKY domain
PROSITE profilePS5081121.884200278IPR003657WRKY domain
SMARTSM007741.4E-28205277IPR003657WRKY domain
PfamPF031061.4E-20207276IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 497 aa     Download sequence    Send to blast
MEVLLMNMAD DHAVKQEENI TQEGCSPEPS KTDIGRKVRK TVDLKLSSSS STHDELETAK  60
EENERLKMML EQIQKNYKSL QSRFFEIIKQ ESAIEEGSEE PELVSLSLGR SSPTGSKKDD  120
KKTTICSKTE EDDHNKSGLT LGLDSKFQLS TEIVSNPSHE NSSKDANKVQ KRPSSDEDHE  180
EGVEQKSQVK RARVSVRTRC DAPTMYDGCQ WRKYGQKISK GNPCPRAYYR CTVAPDCPVR  240
KQVDFSLFYC LSSHKYFCFE DMSILVTTYE GSHNHPIPVS ATTMASTTAA AASMLLSGSS  300
TSQPALSTEI NGLNFSSSLH ENSRLPSYPT ITLDLTASPS SASSFNYFNR FPTNCPATPR  360
FPSTNLNFSS PLVSNESFTQ EHYFYQKSLT DTLTKAITSD PSFRSLISAA ISSMVGHSSA  420
KPGDGTDQRG DSFSQNLMQA AFNSQSLNDS SLRGSSYFKG FESSSSRIGS SNQSSSLSFS  480
SFNAASTLAF DNKQGKN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A7e-16192278174WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM4384710.0KM438471.1 Gossypium aridum WRKY75 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017610465.10.0PREDICTED: probable WRKY transcription factor 72
SwissprotQ9LXG82e-81WRK72_ARATH; Probable WRKY transcription factor 72
TrEMBLA0A1U8I9J80.0A0A1U8I9J8_GOSHI; probable WRKY transcription factor 72
STRINGGorai.006G025700.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2488934
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15130.19e-72WRKY DNA-binding protein 72