PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_28204_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family AP2
Protein Properties Length: 386aa    MW: 44104.9 Da    PI: 8.6345
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_28204_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2353.6e-1164120155
                         AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..krkrfslgkfgtaeeAakaaiaarkkleg 55 
                                 s+++GV+ ++++gr++A+++d  s+n   k+k  + g ++ +e Aa+a++ a++k++g
  Cotton_A_28204_BGI-A2_v1.0  64 SRFRGVSKHRWTGRYEAHLWDkLSWNVtqKKKGKQ-GAYDDEEAAARAYDLAALKYWG 120
                                 789******************88887784446666.99***9**************98 PP
2AP253.84.8e-17163214155
                         AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                 s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa+a++ a+ +++g
  Cotton_A_28204_BGI-A2_v1.0 163 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYNTQEEAARAYDIAAIEYRG 214
                                 89****99**********99966...3.6*************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.9E-764120IPR001471AP2/ERF domain
SuperFamilySSF541712.81E-1464130IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.107.9E-1265129IPR001471AP2/ERF domain
PROSITE profilePS5103217.99165128IPR001471AP2/ERF domain
SMARTSM003805.8E-1965134IPR001471AP2/ERF domain
PRINTSPR003672.9E-56677IPR001471AP2/ERF domain
PfamPF008471.5E-12163214IPR001471AP2/ERF domain
CDDcd000183.89E-25163224No hitNo description
SuperFamilySSF541713.53E-18163224IPR016177DNA-binding domain
PROSITE profilePS5103218.927164222IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.7E-18164223IPR001471AP2/ERF domain
SMARTSM003801.2E-26164228IPR001471AP2/ERF domain
PRINTSPR003672.9E-5204224IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MEMIMVKDES YQRRRRMSSV YGDVQAVRCV KRRRRDRCDV NQGLQQNDQS SNAPAAAITV  60
KRSSRFRGVS KHRWTGRYEA HLWDKLSWNV TQKKKGKQGA YDDEEAAARA YDLAALKYWG  120
TSTSTNFPIS DYEKEIEVMQ TVTKEEFLAS LRRKSSGFSR GVSKYRGVAR HHHNGRWEAR  180
IGRVFGNKYL YLGTYNTQEE AARAYDIAAI EYRGINAVTN FDLSTYVGWL RPGMTNNYRI  240
AANETPATVE PESVQSTSCY SPIEESKPSI HYPFAADYFN SPQKQHVVET NLPVSYKSSS  300
PTALSLLFRS SVFRELVEKN ANNVSEDESS NSDADDEQKN QQPGRSDHSD EFGRLFYDEI  360
GSGFPLFFSP TKDSIQLQEN ELPFVI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11334RRRMSSVYGDVQAVRCVKRRRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012483185.10.0PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060
RefseqXP_016673316.10.0PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A2P5QFT30.0A0A2P5QFT3_GOSBA; Uncharacterized protein
STRINGGorai.006G025100.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM55327140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.34e-77AP2 family protein