PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_28289_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family Trihelix
Protein Properties Length: 399aa    MW: 46003.2 Da    PI: 4.3748
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_28289_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix55.31.8e-17168252286
                    trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmre.rgferspkqCkekwenlnkrykkikegekkrtsessstcpyfd 83 
                                 Wt++e+ +L++a  ++  + +r++l+   W+ev++k++e  ++er+ +qC+++++ l+k+ykk+k++  + t ++ss+++yf+
  Cotton_A_28289_BGI-A2_v1.0 168 WTEHETFVLLDAWGDLFLQRGRKSLRSEEWQEVAEKVSEvSKIERTDTQCRNRLDTLKKKYKKEKAMLAE-TGGTSSKWVYFK 249
                                 *************************************762678**************************9.699999****** PP

                    trihelix  84 qle 86 
                                 +++
  Cotton_A_28289_BGI-A2_v1.0 250 KMD 252
                                 **8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.3E-22167254No hitNo description
Gene3DG3DSA:1.10.10.601.8E-4168233IPR009057Homeodomain-like
PROSITE profilePS500906.481168225IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MDNVEDNARH PSNPYDVGHQ PGYGSSNHQK LSVRNNPYVR PTGNQYVVDD EEEEEEENDE  60
DLEEEENRNR NNGVRYVGKD MDDVDDDDND ELDDEEDGDE DDYDENGDKQ KGYDGKNDDV  120
DMERHPKKRK LKSLLSSYEF APRVPAPAVS APSVPKPSFG GRNSLTDWTE HETFVLLDAW  180
GDLFLQRGRK SLRSEEWQEV AEKVSEVSKI ERTDTQCRNR LDTLKKKYKK EKAMLAETGG  240
TSSKWVYFKK MDMLMSTPPQ QGGLSCGLDS GEYVFMNPRV YLNGANGLDE MRDSPADSDS  300
ADSEEDVSDG LPPKKRKFGR QYDEGCSFRL LADLIQKFSD TYEKIEDSKR RQMLELEKMR  360
MDFHRELEMQ KQHIMERAQA EIAKIQQQAD DDENEKASR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017645571.10.0PREDICTED: trihelix transcription factor ASIL1-like
TrEMBLA0A1U8MFZ90.0A0A1U8MFZ9_GOSHI; trihelix transcription factor ASIL1-like
STRINGGorai.010G228000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15605916
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24490.17e-59Trihelix family protein