PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_28547_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C3H
Protein Properties Length: 352aa    MW: 38253 Da    PI: 8.5597
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_28547_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH32.51.5e-105275427
                                ---SGGGGTS--TTTTT-SS-SSS CS
                     zf-CCCH  4 elCrffartGtCkyGdrCkFaHgp 27
                                  C +++rtG+C yG++C+++H++
  Cotton_A_28547_BGI-A2_v1.0 52 TDCVYYMRTGFCGYGNSCRYNHPR 75
                                68********************96 PP
2zf-CCCH41.62e-1394120127
                                 --S---SGGGGTS--TTTTT-SS-SSS CS
                     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                                 ++++ C+f+++tGtCk+G++CkF+H++
  Cotton_A_28547_BGI-A2_v1.0  94 PGEPVCQFYLKTGTCKFGASCKFHHPK 120
                                 5789*********************96 PP
3zf-CCCH37.15.1e-12141166227
                                 -S---SGGGGTS--TTTTT-SS-SSS CS
                     zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                                 ++++C+++++tG+Ck+G +CkF+H++
  Cotton_A_28547_BGI-A2_v1.0 141 GEKECSYYLKTGQCKFGITCKFHHPQ 166
                                 7899********************97 PP
4zf-CCCH375.7e-12289315127
                                 --S---SGGGGTS--TTTTT-SS-SSS CS
                     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                                 +++++C++++rtG Ck+G++C+++H++
  Cotton_A_28547_BGI-A2_v1.0 289 PGEPECQYYLRTGDCKFGSSCRYHHPR 315
                                 5799*********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003563.8E-64875IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.1694876IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.14E-65076IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-75275IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.9E-55475IPR000571Zinc finger, CCCH-type
SMARTSM003569.9E-893120IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.61593121IPR000571Zinc finger, CCCH-type
PfamPF006427.0E-1195120IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-697121IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.7E-698119IPR000571Zinc finger, CCCH-type
SMARTSM003562.3E-5139166IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.821139167IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.97E-6141167IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-9141166IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.0E-4145165IPR000571Zinc finger, CCCH-type
SMARTSM003569.0E-6288315IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.817288316IPR000571Zinc finger, CCCH-type
PfamPF006422.5E-9290315IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.06E-6292317IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.7E-5294315IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MELYGRNPTR NGSQSGYQPE WSPAGPETGL EESMWQLSVR GVESYPERLG VTDCVYYMRT  60
GFCGYGNSCR YNHPRNRAAV EAAVRATGEY PERPGEPVCQ FYLKTGTCKF GASCKFHHPK  120
DGGGSFSHVS LNMHGYPLRP GEKECSYYLK TGQCKFGITC KFHHPQPSGT SMSASAPQFY  180
QPVQYGGAST NVRVARPPPL PGSYVQGGAY GPVLFSPGVV PIPGWSHYLA PVSPVLSPGA  240
QPAAGATSLY GLTHLSSSTP SLAGPYSSLP SSTGLSRSNQ KEHTFPERPG EPECQYYLRT  300
GDCKFGSSCR YHHPRDRVVP QTNCVLSPMG LPLRPLEVFV PWGGNKETAL QP
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021280725.10.0zinc finger CCCH domain-containing protein 32
SwissprotQ84W911e-170C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBLA0A0B0N0770.0A0A0B0N077_GOSAR; Uncharacterized protein
STRINGGorai.004G053200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM59122647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.31e-159C3H family protein