PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_28656_BGI-A2_v1.0

Common Name

F383_08338

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

WOX

Protein Properties

Length: 244aa MW: 27715.8 Da PI: 5.8087

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_28656_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	64	2.1e-20	94	154	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+t+ ql++Le+ F + + +ps+++++e++++l ++e++V++WFqNrRa+ k+ Cotton_A_28656_BGI-A2_v1.0 94 RQRWTPTAVQLQILERIFDEgTGTPSKQKIKEITSELsqhgPISETNVYNWFQNRRARSKR 154 89***************99**************999***************97 PP
2	Wus_type_Homeobox	100.3	1.4e-32	93	156	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ar+RWtPt+ Q++iLe+++++G+ tP+k++i++it+eL+++G i+++NV++WFQNr+aR+++kq Cotton_A_28656_BGI-A2_v1.0 93 ARQRWTPTAVQLQILERIFDEGTGTPSKQKIKEITSELSQHGPISETNVYNWFQNRRARSKRKQ 156 689***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	6.5E-17	88	158	IPR009057	Homeodomain-like
PROSITE profile	PS50071	14.641	90	155	IPR001356	Homeobox domain
SMART	SM00389	1.7E-14	92	159	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.45E-17	93	156	IPR009057	Homeodomain-like
CDD	cd00086	2.46E-13	94	156	No hit	No description
Pfam	PF00046	3.4E-18	94	154	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 244 aa Download sequence Send to blast
MIMEWDQQQE NQSQNQREDS VNLNVNNGVM YVKVMTDEQL ETLRKQIAVY ASICEQLVEM 60 HKNLTAQQDL TGGRLGNLYC DPLMTSGGHK ISARQRWTPT AVQLQILERI FDEGTGTPSK 120 QKIKEITSEL SQHGPISETN VYNWFQNRRA RSKRKQVMVA SSSNNNNNHN NAGESEVETE 180 VESPKTKPEN LLLVSEGQGQ HHDVCFQNPE ITSQLHFLGV GDDHMSAKRM GGSYHIYDQA 240 WQGE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	147	155	RRARSKRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016728444.1	0.0	PREDICTED: WUSCHEL-related homeobox 13-like
Refseq	XP_017623464.1	0.0	PREDICTED: WUSCHEL-related homeobox 13
Swissprot	O81788	8e-87	WOX13_ARATH; WUSCHEL-related homeobox 13
TrEMBL	A0A0B0NHA7	0.0	A0A0B0NHA7_GOSAR; WUSCHEL-related homeobox 13-like protein
TrEMBL	A0A1U8MSC5	0.0	A0A1U8MSC5_GOSHI; WUSCHEL-related homeobox 13-like
STRING	Gorai.003G002200.1	1e-166	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4620	28	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35550.1	6e-87	WUSCHEL related homeobox 13

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Dolzblasz A, et al. Stem Cell Regulation by Arabidopsis WOX Genes. Mol Plant, 2016. 9(7): p. 1028-39 [PMID:27109605]