PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_28834_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 61aa    MW: 7007.19 Da    PI: 10.3287
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_28834_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM262.5e-0833991128
                         NAM  91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                                 ++++ +++++g +k +vf  + +++g+k +W+mhe++l
  Cotton_A_28834_BGI-A2_v1.0   3 PIMC-GKKKIGNRKLFVFKVKGSNEGRKGHWLMHEFSL 39 
                                 6788.8999**********9999*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100511.71161IPR003441NAC domain
SuperFamilySSF1019411.1E-9346IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 61 aa     Download sequence    Send to blast
MDPIMCGKKK IGNRKLFVFK VKGSNEGRKG HWLMHEFSLV DHHDEQVGSL FHPSPILSKS  60
F
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017639771.12e-19PREDICTED: NAC domain-containing protein 41-like
TrEMBLA0A1U8HWE18e-18A0A1U8HWE1_GOSHI; NAC domain-containing protein 41-like
STRINGGorai.010G251100.17e-18(Gossypium raimondii)