PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_29050_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 203aa    MW: 23013.2 Da    PI: 9.7754
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_29050_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM103.72.5e-3211171128
                         NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyW 83 
                                 +p GfrFhPtdeelvv+yLk+k+ + +l++ +vi+e+d++ ++Pw+Lp +v   +++ yfFs+r +            + gyW
  Cotton_A_29050_BGI-A2_v1.0   1 MPIGFRFHPTDEELVVHYLKRKALSLPLPA-SVISEFDVLGTHPWSLPGEV---NEKRYFFSSRGRDGG--------GSGGYW 71 
                                 699***************************.99***************554...4578*****988654........368*** PP

                         NAM  84 katgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                                 k  g++k+++++ ++e+vg+++tL+f   + ++ ++t+W++h+yrl
  Cotton_A_29050_BGI-A2_v1.0  72 KPIGREKPIIETgSNEVVGMRRTLIFCGRKPSNHTNTRWFLHQYRL 117
                                 **********9967778**********77888899*********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.09E-401142IPR003441NAC domain
PROSITE profilePS5100540.8241142IPR003441NAC domain
PfamPF023654.2E-202117IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MPIGFRFHPT DEELVVHYLK RKALSLPLPA SVISEFDVLG THPWSLPGEV NEKRYFFSSR  60
GRDGGGSGGY WKPIGREKPI IETGSNEVVG MRRTLIFCGR KPSNHTNTRW FLHQYRLLHS  120
NSTQMVKREM AGDWLVFRVF QRKRKARKHA AKMATCIDFT ADCPVFNPPP QSTSPSSSEI  180
TEVSPNGLDE EESSAFITSC IRN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-24114815174Stress-induced transcription factor NAC1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1140147QRKRKARK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC8472370.0KC847237.1 Gossypium hirsutum NAC domain protein NAC60 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017614824.11e-152PREDICTED: NAC domain-containing protein 83-like
TrEMBLA0A1U8NHH91e-128A0A1U8NHH9_GOSHI; NAC domain-containing protein 83-like
TrEMBLA0A2P5YUL71e-128A0A2P5YUL7_GOSBA; Uncharacterized protein
STRINGGorai.012G083700.11e-122(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM78742541
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.13e-37NAC domain containing protein 83