PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_29108_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

NAC

Protein Properties

Length: 260aa MW: 30574.4 Da PI: 4.7581

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_29108_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	144	8.5e-45	28	153	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka.eekewyfFskrdkkyatgkrknratksgyW 83 p+G+rF+P+d+elv +yLk+k+ + +l+ + i++v++y+++P++L +k+++ +e+ewyfF++rdkky++g r+nra+ +gyW Cotton_A_29108_BGI-A2_v1.0 28 PAGYRFKPRDDELVLFYLKPKLLNLRLPP-NRIRDVELYQYNPQQLIEKYESyGEEEWYFFTPRDKKYRNGLRPNRAAGDGYW 109 89**********************999.77**********8555554788*********************** PP NAM 84 katgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 katg dk ++s +++++g +k Lvfykg+ pkgektdW+mhe+rl Cotton_A_29108_BGI-A2_v1.0 110 KATGADKILKS-ESHEIGYRKALVFYKGKPPKGEKTDWMMHEFRL 153 *988877.999**************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.7E-54	25	178	IPR003441	NAC domain
PROSITE profile	PS51005	52.149	27	178	IPR003441	NAC domain
Pfam	PF02365	3.6E-24	28	153	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 260 aa Download sequence Send to blast
MSNNFGLGTM ENINNHEEDD EELLNSFPAG YRFKPRDDEL VLFYLKPKLL NLRLPPNRIR 60 DVELYQYNPQ QLIEKYESYG EEEWYFFTPR DKKYRNGLRP NRAAGDGYWK ATGADKILKS 120 ESHEIGYRKA LVFYKGKPPK GEKTDWMMHE FRLKDPPAKL SQDEMRLDDW ILCKIYKKSD 180 KSSKNSALIS DNSQGIVSFE YGSDEFGEMD DNLYCEYLMF DHNPSLLLDD NFCDYYDPSL 240 MPMAMVEQGR MDSPDKKTTS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	9e-53	17	184	7	171	NO APICAL MERISTEM PROTEIN
1ut4_B	9e-53	17	184	7	171	NO APICAL MERISTEM PROTEIN
1ut7_A	9e-53	17	184	7	171	NO APICAL MERISTEM PROTEIN
1ut7_B	9e-53	17	184	7	171	NO APICAL MERISTEM PROTEIN
3swm_A	1e-52	17	184	10	174	NAC domain-containing protein 19
3swm_B	1e-52	17	184	10	174	NAC domain-containing protein 19
3swm_C	1e-52	17	184	10	174	NAC domain-containing protein 19
3swm_D	1e-52	17	184	10	174	NAC domain-containing protein 19
3swp_A	1e-52	17	184	10	174	NAC domain-containing protein 19
3swp_B	1e-52	17	184	10	174	NAC domain-containing protein 19
3swp_C	1e-52	17	184	10	174	NAC domain-containing protein 19
3swp_D	1e-52	17	184	10	174	NAC domain-containing protein 19
4dul_A	9e-53	17	184	7	171	NAC domain-containing protein 19
4dul_B	9e-53	17	184	7	171	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds DNA motifs 5'-CGT[AG](5N)NACG[ACT][AC][AT][ACG][ACT]-3' and 5'-CACG[ACT][AC][AT][AGT][CT]-3' in target genes promoters. Promotes leaf senescence and reduces fruit yield and sugar content, probably by establishing abscisic acid (ABA) homeostasis. {ECO:0000269\|PubMed:29760199}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Accumulates during age-dependent and dark-induced leaf senescence. {ECO:0000269\|PubMed:29760199}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC847251	0.0	KC847251.1 Gossypium hirsutum NAC domain protein NAC74 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017610605.1	0.0	PREDICTED: NAC transcription factor 29-like
Swissprot	K4BWV2	3e-57	NAP1_SOLLC; NAC domain-containing protein 1
TrEMBL	A0A2P5X5K9	0.0	A0A2P5X5K9_GOSBA; Uncharacterized protein
STRING	Gorai.006G005100.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM24908	3	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69490.1	2e-56	NAC-like, activated by AP3/PI

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Ma X, et al. The NAC Transcription Factor SlNAP2 Regulates Leaf Senescence and Fruit Yield in Tomato. Plant Physiol., 2018. 177(3): p. 1286-1302 [PMID:29760199]