PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_29111_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NF-YB
Protein Properties Length: 201aa    MW: 22777.3 Da    PI: 7.5546
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_29111_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB178.65.7e-5632127297
                       NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplk 84 
                                 +eqdrflPianv+rimkkv+P+n+kiskdaketvqecvsefisfvt+easdkcqrekrktingdd++wa++tlGfe+yv plk
  Cotton_A_29111_BGI-A2_v1.0  32 KEQDRFLPIANVGRIMKKVIPSNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDIIWAITTLGFEEYVGPLK 114
                                 89********************************************************************************* PP

                       NF-YB  85 vylkkyrelegek 97 
                                 +yl+kyre+egek
  Cotton_A_29111_BGI-A2_v1.0 115 LYLTKYREIEGEK 127
                                 **********996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.103.6E-5327149IPR009072Histone-fold
SuperFamilySSF471134.81E-4034142IPR009072Histone-fold
PfamPF008085.2E-2837101IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006154.5E-196583No hitNo description
PROSITE patternPS0068506884IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006154.5E-1984102No hitNo description
PRINTSPR006154.5E-19103121No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MEDENAAHVH NKGSPESPCA KSGGSSNNNN NKEQDRFLPI ANVGRIMKKV IPSNGKISKD  60
AKETVQECVS EFISFVTGEA SDKCQREKRK TINGDDIIWA ITTLGFEEYV GPLKLYLTKY  120
REIEGEKLNL PKQQRSEQKQ HQQSKHEQNI AFNTNVYSST NLLSRHTSFV PSDQPFSLPF  180
SSNNIQKQLQ QQDQIDSVGY W
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1n1j_A1e-4432122393NF-YB
4awl_B1e-4432122494NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A1e-4432122494NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4g91_B2e-4432122292Transcription factor HapC (Eurofung)
4g92_B2e-4432122292Transcription factor HapC (Eurofung)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017609703.11e-149PREDICTED: nuclear transcription factor Y subunit B-7
SwissprotQ9SIT93e-69NFYB7_ARATH; Nuclear transcription factor Y subunit B-7
TrEMBLA0A1U8HVW91e-147A0A1U8HVW9_GOSHI; nuclear transcription factor Y subunit B-7-like
STRINGGorai.006G005400.11e-126(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25528229
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G13570.13e-65nuclear factor Y, subunit B7
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]