PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_29310_BGI-A2_v1.0
Common NameF383_17118
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 516aa    MW: 55837.1 Da    PI: 9.4967
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_29310_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.21.5e-0578100123
                                 EEETTTTEEESSHHHHHHHHHHT CS
                     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                 ++C++C+k F r  nL+ H r H
  Cotton_A_29310_BGI-A2_v1.0  78 FVCEICNKGFQRDQNLQLHRRGH 100
                                 89*******************88 PP
2zf-C2H212.10.00061154176123
                                 EEETTTTEEESSHHHHHHHHHHT CS
                     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                 +kC +C+k +  +s+ k H +t+
  Cotton_A_29310_BGI-A2_v1.0 154 WKCDKCSKKYAVQSDWKAHSKTC 176
                                 58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.13E-677100No hitNo description
Gene3DG3DSA:3.30.160.601.7E-577100IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.01778100IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.94978100IPR007087Zinc finger, C2H2
PROSITE patternPS00028080100IPR007087Zinc finger, C2H2
SMARTSM00355220119149IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.605.2E-4142175IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.13E-6149174No hitNo description
SMARTSM00355150154174IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 516 aa     Download sequence    Send to blast
MSNITGDGGG SFSSETHHQE QQVGNFHGGS NSLLSTNSNG GSTAPPPAKK KRNLPGTPDP  60
NAEVIALSPK TLLATNRFVC EICNKGFQRD QNLQLHRRGH NLPWKLKQRT STEIRKRVYV  120
CPEPSCVHHN PARALGDLTG IKKHFCRKHG EKKWKCDKCS KKYAVQSDWK AHSKTCGTKE  180
YKCDCGTIFS RRDSFITHRA FCDALTEENN KASRGLINVG SNLQGQVVAA DQLISAIPVN  240
NNPNTSAINI SEPFSNDTKS SLQSLNLAAG TMFSNGSSSL FGGTKVTTVP NPSSTSCLQL  300
NGNSSTLFEG NGGHLFSGSA SMSATALLQK AAQMGATAST GSLNSPLMGK SYTTTSTMAP  360
PSFVSMQTHE NNNNNNQTQT LGGADSTGFT SQSDFFNANG GVDQSSSVNN MGVMFSGIFE  420
QNNAFFKSVE SSTPRTTGLS GFRADTMTVD FLGIGGSRPR NLLEKQHHHH HHHHHHHHPH  480
QPQQDLEQFG GIGQARLQGL SHFQQHAVLE KPMWKV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-34150213366Zinc finger protein JACKDAW
5b3h_F1e-34150213366Zinc finger protein JACKDAW
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ5272661e-111HQ527266.1 Gossypium herbaceum clone NBRI_B_5962 simple sequence repeat marker, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017627784.10.0PREDICTED: protein indeterminate-domain 2-like
TrEMBLA0A0B0NTW30.0A0A0B0NTW3_GOSAR; Zinc finger MAGPIE-like protein
STRINGGorai.007G298600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1964967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03840.11e-103C2H2 family protein