PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_29326_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family BBR-BPC
Protein Properties Length: 93aa    MW: 10622.7 Da    PI: 11.2573
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_29326_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind25.43.9e-08485147237
                   GAGA_bind 147 kkkkkkrqrakkpkekkakkkkkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGG 229
                                 +k + k++++ + k  + k++++k++ +kk + +     ++++ekk  ++ +++  +D s++P P     G+ r+     +G 
  Cotton_A_29326_BGI-A2_v1.0   4 QKPSMKGSNQIVSKLLRPKQPENKPSGPKKAKGPIV--LEARREKK--NILMEKKLFDFSRVPLP-----GVRRVVQVGDAGD 77 
                                 444555666666677777777776666655555444..45666666..56789999*********.....9999998888999 PP

                   GAGA_bind 230 WqSaCCtt 237
                                 WqS+CCt+
  Cotton_A_29326_BGI-A2_v1.0  78 WQSSCCTI 85 
                                 *******8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 93 aa     Download sequence    Send to blast
MRKQKPSMKG SNQIVSKLLR PKQPENKPSG PKKAKGPIVL EARREKKNIL MEKKLFDFSR  60
VPLPGVRRVV QVGDAGDWQS SCCTIMYRNI LFL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012475611.17e-52PREDICTED: LOW QUALITY PROTEIN: protein BASIC PENTACYSTEINE7
TrEMBLA0A0D2R6V32e-28A0A0D2R6V3_GOSRA; Uncharacterized protein
STRINGGorai.004G181000.13e-29(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM3582622
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35550.41e-10basic pentacysteine 7